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AT3G03220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A13
Curator
Summary (TAIR10)
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin A13 (EXPA13); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A16 (TAIR:AT3G55500.1); Has 2069 Blast hits to 2066 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2056; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGREeggNOG:ENOG410YCCEEMBL:AC012328EMBL:AY059732
EMBL:AY113990EMBL:CP002686EnsemblPlants:AT3G03220EnsemblPlants:AT3G03220.1
entrez:821224Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:821224
Genevisible:Q9M9P0GO:GO:0005576GO:GO:0005618GO:GO:0009664
GO:GO:0016020Gramene:AT3G03220.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF3
HOGENOM:HOG000220793InParanoid:Q9M9P0InterPro:IPR002963InterPro:IPR007112
InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT3G03220
OMA:SEWRPAKPaxDb:Q9M9P0Pfam:PF01357Pfam:PF03330
Pfam:Q9M9P0Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q9M9P0
PRIDE:Q9M9P0PRINTS:PR01225PRINTS:PR01226PRO:PR:Q9M9P0
PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q9M9P0Proteomes:UP000006548
RefSeq:NP_566197.1SMART:SM00837SMR:Q9M9P0STRING:3702.AT3G03220.1
SUPFAM:SSF49590SUPFAM:SSF50685TAIR:AT3G03220tair10-symbols:ATEXP13
tair10-symbols:ATEXPA13tair10-symbols:ATHEXP ALPHA 1.22tair10-symbols:EXP13tair10-symbols:EXPA13
UniGene:At.23584UniGene:At.43040UniProt:Q9M9P0
Coordinates (TAIR10) chr3:-:742655..743975
Molecular Weight (calculated) 28977.30 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.21
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRFLLPLLF LALSPPAICH YSSSTSSPSS SSVSSDASEW RPARATYYAA TNPRDAVGGA CGYGDLVKSG YGMATVGLSE TLFERGQICG ACFELRCVDD
101: LRWCIPGTSI ILTATNFCAP NYGFDPDGGG HCNPPNKHFV LPIEAFEKIA IWKAGNMPVQ YRRINCRKEG SMRFTVDGGG IFISVLITNV AGSGDIAAVK
201: IKGSRTGWLP MGRNWGQNWH INADLRNQAL SFEVTSSDRS TVTSYNVSPK NWNYGQTFEG KQFETP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)