AT1G15440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : periodic tryptophan protein 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
periodic tryptophan protein 2 (PWP2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 76374 Blast hits to 32281 proteins in 860 species: Archae - 60; Bacteria - 9617; Metazoa - 31125; Fungi - 15572; Plants - 10039; Viruses - 0; Other Eukaryotes - 9961 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5306159..5309460 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100477.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 900 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFRFENLLG APYRGGNAVI TKNTQLISPV GNRVSVTDLS KNHSVTLPLE TSTNICRLAS SPDGTFLLAV DEQNRCLFIN LPRRVVLHRI TFKDKVGALK 101: FSPNGKFIAV GIGKLVEIWR SPGFRRAVLP FERVRTFANS DDKVVSLEWS LDSDYLLVGS RDLAARLFCV RKLKGVLNKP FLFLGHRDSV VGCFFGVDKM 201: TNKVNRAFTI ARDGYIFSWG YTEKDVKMDE SEDGHSEPPS PVTPDRADEV MVENGGGVGT ELKKRKEYDG KGLESDEEGD DDDEEYMHRG KWVLLRKDGC 301: NQASAKVTAC DYHQGLDMVV VGFSNGVFGL YQMPDFICIH LLSISRQKLT TAVFNERGNW LTFGCAKLGQ LLVWDWRTET YILKQQGHYF DVNCVTYSPD 401: SQLLATGADD NKVKVWNVMS GTCFITFTEH TNAVTALHFM ADNHSLLSAS LDGTVRAWDF KRYKNYKTYT TPTPRQFVSL TADPSGDVVC AGTLDSFEIF 501: VWSKKTGQIK DILSGHEAPV HGLMFSPLTQ LLASSSWDYT VRLWDVFASK GTVETFRHNH DVLTVAFRPD GKQLASSTLD GQINFWDTIE GVLMYTIEGR 601: RDIAGGRVMT DRRSAANSSS GKCFTTLCYS ADGGYILAAG TSRYICMYDI ADQVLLRRFQ ISHNLSLDGV LDFLHSKKMT EAGPIDLIDD DNSDEEGGID 701: KQSRGNLGYD LPGSRPNRGR PIIRTKSLSI APTGRSFAAA TTEGVLIFSI DDTFIFDPTD LDIDVTPEAV EAAIEEDEVS RALALSMRLN EDSLIKKCIF 801: AVAPADIKAV AISVRQKYLE RLMEALVDLL ENCPHLEFIL HWCQEICKAH GSSIQRNYRT LLPALRSLQK AITRAHQDLA DMCSSNEYTL RYLCSVPNNH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)