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AT1G13190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55670.1); Has 32447 Blast hits to 17825 proteins in 1064 species: Archae - 7; Bacteria - 12227; Metazoa - 10368; Fungi - 2543; Plants - 3608; Viruses - 174; Other Eukaryotes - 3520 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AC007357EMBL:AY062527EMBL:BT002575EMBL:CP002684EnsemblPlants:AT1G13190
EnsemblPlants:AT1G13190.1entrez:837877Gene3D:3.30.70.330GeneID:837877GO:GO:0000166GO:GO:0003676Gramene:AT1G13190.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF425HOGENOM:HOG000242877InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT1G13190KO:K14398
OMA:MTEENDYPfam:PF00076Pfscan:PS50102PhylomeDB:Q9SAF2PIR:C86266PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_172778.1SMART:SM00360SMR:Q9SAF2STRING:3702.AT1G13190.1SUPFAM:SSF54928TAIR:AT1G13190UniGene:At.27310
UniGene:At.48183UniProt:Q9SAF2
Coordinates (TAIR10) chr1:+:4499633..4501354
Molecular Weight (calculated) 61403.50 Da
IEP (calculated) 6.01
GRAVY (calculated) -0.89
Length 573 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEENDYGGN QKILHQGSGT IPALADEELM GDDDEYDDLY SDVNVGESFF QAHNQPQPPA QVNTSNASLQ AQNSHVAAEP RMGIVSGGTV EGKYRNDGGH
101: NGISGPDTRS DVYPQASSFG AKGLNIDIQS NKIAQQGSTT VVLNNHGFSG NAVNVPEMPV HNSYGAPPQG AQQIPVSQMS VNPNVMMNKS PTQSFVVDNG
201: NTMLFVGELH WWTTDAEIES VLSQYGRVKE IKFFDERVSG KSKGYCQVEF YDSAAAAACK EGMNGFIFNG KACVVAFASP ETLKQMGANF TGRNQGQNQI
301: QNRRPLNEGM GRGNNNNNNM NTQNGDGGRN YGRGGFARGG QGMGNRGGAW GGAMRGRGVN NMASGSGAGP YGPGLAGPAF GGMMHPQGMM GAGGFDPTFM
401: GRGAGYGGYS GIAYPGMPHS YPGVNAMGMV GIAPHVNPAF FGTGMGTMGS SGMNGVHAAA MWSEANGGGG EEGGSEYGGY EDETQEKEEK PSRDKERATT
501: ERDWSENSGD RRHKSHREEK DSHREYKQQR DRDSDEFDRG QSSLKSRSRS RMSEDDHRSR SRDADYGKRR RGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)