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AT1G12850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphoglycerate mutase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Uncharacterised conserved protein UCP036920, phosphoglycerate mutase, plant X4/Y4 (InterPro:IPR017070); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G26780.1); Has 1723 Blast hits to 1681 proteins in 525 species: Archae - 4; Bacteria - 974; Metazoa - 334; Fungi - 35; Plants - 147; Viruses - 2; Other Eukaryotes - 227 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0406eggNOG:KOG0234EMBL:AY039522EMBL:AY113075
EMBL:CP002684EnsemblPlants:AT1G12850EnsemblPlants:AT1G12850.1entrez:837842
Gene3D:3.40.50.1240GeneID:837842Gramene:AT1G12850.1hmmpanther:PTHR23029
hmmpanther:PTHR23029:SF39InterPro:IPR013078InterPro:IPR017070InterPro:IPR029033
KEGG:ath:AT1G12850ncoils:CoilOMA:STCIGVFPfam:PF00300
PhylomeDB:Q94BZ6PIRSF:PIRSF036920Proteomes:UP000006548RefSeq:NP_563918.1
SMART:SM00855SMR:Q94BZ6STRING:3702.AT1G12850.1SUPFAM:SSF53254
TAIR:AT1G12850UniGene:At.21736UniProt:Q94BZ6
Coordinates (TAIR10) chr1:-:4380022..4381577
Molecular Weight (calculated) 44862.70 Da
IEP (calculated) 4.79
GRAVY (calculated) -0.43
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSQSSQLL DEEEEEEDEA ESEGEEVEEE EDEAESELNN RRIELDNLLV KKVLEQEPEM LPCHASASPL SPQLSSLGTP RIGPSIKVWD PYNVLAPPPP
101: SSPPLFSRIS SAAEHDRSAV TEVYFISHGE CDLNLRPDLI GGRCHVATLT PNGKRQARAL AVFLNSEGVR FTSVFSSPLD RARSMAVSVC QEMNFPEEHL
201: QVSDAVVEMS LGDWESCHRS EIYTPETLSL IERCQPDFSA PSGESLRQVE FRMVQFLNGT VSGLSEKLRS ELLPSTQHTN SRGFSLATSI HRPILTRKKS
301: GKSRFQVMNA TGDHEGSEEI FSNHNDEQHL GDINIKSSSS QLSTCIGVFT HSLPIKCLLT GILGCSPVMT HKICVEDSSV TVLQHSWKTG WQVKRLNDTA
401: HLRLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)