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AT1G08660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MALE GAMETOPHYTE DEFECTIVE 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MALE GAMETOPHYTE DEFECTIVE 2 (MGP2); FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 29 (sialyltransferase) family protein (TAIR:AT3G48820.1); Has 1529 Blast hits to 1526 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 1325; Fungi - 0; Plants - 155; Viruses - 13; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
CAZy:GT29DNASU:837388EC:2.4.-.-eggNOG:ENOG410XT8PeggNOG:KOG2692EMBL:AC003981EMBL:AY064135
EMBL:AY124807EMBL:CP002684EMBL:KJ139019EnsemblPlants:AT1G08660EnsemblPlants:AT1G08660.1entrez:837388ExpressionAtlas:Q8VZJ0
GeneID:837388Genevisible:Q8VZJ0GO:GO:0000139GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0008373
GO:GO:0009311GO:GO:0009846GO:GO:0009860GO:GO:0016021GO:GO:0018279GO:GO:0097503hmmpanther:PTHR13713
hmmpanther:PTHR13713:SF31HOGENOM:HOG000243861InterPro:IPR001675OMA:NSTWYNEPaxDb:Q8VZJ0Pfam:PF00777PhylomeDB:Q8VZJ0
PIR:T00720ProteinModelPortal:Q8VZJ0Proteomes:UP000006548RefSeq:NP_850940.1SMR:Q8VZJ0STRING:3702.AT1G08660.1TAIR:AT1G08660
tair10-symbols:MGP2TMHMM:TMhelixUniGene:At.27075UniProt:Q8VZJ0
Coordinates (TAIR10) chr1:-:2757116..2759677
Molecular Weight (calculated) 54219.20 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.44
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSHQAGRKL PLLQLLGCVA VFSVFVFTIQ SSFFADNNRK LDLQPEDIQI LSDFQSSVQQ CVANRGLGLS AHIIDHCNLI LKFPEGTNST WYNAQFKVFE
101: ALEFKYNVCE AVLLWEQYRN MTTVLTREYL DVRPDGWLDY AAMRIAQLGA DKCYNRTLCE EHLNVILPAK PPFHPRQFHK CAVVGNSGDL LKTEFGEEID
201: SHDAVFRDNE APVNEKYAKY VGVKRDFRLV VRGAARNMIK ILNGSDNEVL IIKSVTHRDF NEMIKRIPNP VYLFQGIVLR RGAKGTGMKS IELALSMCDI
301: VDIYGFTVDP GYTEWTRYFS TPRKGHNPLQ GRAYYQLLEC LGVIRIHSPM RSERKEDWSS VPSREMISRA HTAALRLQRS QQPTSSKRDG SGQFGNCKVW
401: GDADPTKGPV SGSPDMSETR KKSNYKKWEV MPFRSLRKEA RDHYIQMKGV SQYKMDGNKL DDLVCVRHPL KLDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)