AT1G05440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.714 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C-8 sterol isomerases | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C-8 sterol isomerases; FUNCTIONS IN: C-8 sterol isomerase activity; INVOLVED IN: ergosterol biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ERG2/sigma1 receptor-like (InterPro:IPR006716); Has 118 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 4; Plants - 21; Viruses - 1; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1596374..1597843 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43434.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.82 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||
| Length | 384 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MINRETMKGK ILVSPSEKSM TSSTTTTTTT TTTVSTEDWE RRDSNCYFPD CRKDANCSCE ICLDSLNATL DLMPLSVQKS SLTKLSSASN FKSTVESTPT 101: SFDPTVVTTP ASVSRPILKL MISSPKKKLT KKSKVFENEE QRKTTKKERR LLIVVFLKVI LVIGLVLGLE LGFSWVLEEV FKPEFTEEIV RNAYERTQAD 201: LDLGVKLRLL EDEFKGFVTS RKFSRCTGSD SKWKINQDGP MLNSKCVLYK SAIEEVSIWG WPLQTSGLFH TGFSSSSITV LSGRVTEWTE GKFGYSIHET 301: NTSWGKTKWS TSVLQLDPNT WVLEYSQSSV MDDSSSLLSL TIDIMEHLVF RVAKNVNRER YWMFSSSRRL YREAESKASA MTPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)