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AT5G67230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.963
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.
Computational
Description (TAIR10)
IRREGULAR XYLEM 14-LIKE (IRX14-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G36890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
CAZy:GT43EC:2.4.2.-eggNOG:ENOG410XP79eggNOG:KOG1476
EMBL:AB020742EMBL:AY070076EMBL:CP002688EMBL:KJ138625
EnsemblPlants:AT5G67230EnsemblPlants:AT5G67230.1entrez:836858ExpressionAtlas:Q9FH90
Gene3D:3.90.550.10GeneID:836858Genevisible:Q9FH90GO:GO:0000139
GO:GO:0005794GO:GO:0009834GO:GO:0010417GO:GO:0015018
GO:GO:0016021GO:GO:0042285GO:GO:0071555Gramene:AT5G67230.1
hmmpanther:PTHR10896hmmpanther:PTHR10896:SF17HOGENOM:HOG000242041InParanoid:Q9FH90
InterPro:IPR005027InterPro:IPR029044KEGG:ath:AT5G67230OMA:CCLISLI
PANTHER:PTHR10896PaxDb:Q9FH90Pfam:PF03360Pfam:Q9FH90
PhylomeDB:Q9FH90PRIDE:Q9FH90PRO:PR:Q9FH90ProteinModelPortal:Q9FH90
Proteomes:UP000006548RefSeq:NP_201524.1SMR:Q9FH90STRING:3702.AT5G67230.1
SUPFAM:SSF53448TAIR:AT5G67230tair10-symbols:I14Htair10-symbols:IRX14-L
TMHMM:TMhelixUniGene:At.28408UniGene:At.71151UniProt:Q9FH90
UniProt:W8Q2M9
Coordinates (TAIR10) chr5:+:26822506..26824181
Molecular Weight (calculated) 55352.20 Da
IEP (calculated) 10.29
GRAVY (calculated) -0.22
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLSVFRLSY WNRRGSSFRS SPSLDPSFDG KSPSSVFWFV IHGLCCLISL ILGFRFSHLV LFFLFSTSVT NLYTTPFLFA GNGGVSQLLR LKPLETATNS
101: TVKKNSRVVV GRHGIRIRPW PHPNPIEVLR AHQLLVRVQK EQKSMYGVRS PRTVIVVTPT YVRTFQALHL TGVMHSLMLV PYDLVWIVVE AGGITNETAS
201: FIAKSGLKTI HLGFDQKMPN TWEDRHKLET KMRLHALRVV REKKLDGIVM FADDSNMHSM ELFDEIQTVK WFGALSVGIL AHSGNADELS SILKNEQGKN
301: KEKPSMPIQG PSCNSSEKLV GWHIFNTQPY AKKTAVYIDE KAPVMPSKME WSGFVLNSRL LWKESLDDKP AWVKDLSLLD DGYAEIESPL SLVKDPSMVE
401: PLGSCGRRVL LWWLRVEARA DSKFPPGWII KSPLEITVPS KRTPWPDSSS ELPAAAIKEA KSNSKPRVSK SKSYKEKQEP KAFDGVKVSA TS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)