AT5G67230.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.963 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
IRREGULAR XYLEM 14-LIKE (IRX14-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G36890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:+:26822506..26824181 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 55352.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 492 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKLSVFRLSY WNRRGSSFRS SPSLDPSFDG KSPSSVFWFV IHGLCCLISL ILGFRFSHLV LFFLFSTSVT NLYTTPFLFA GNGGVSQLLR LKPLETATNS 101: TVKKNSRVVV GRHGIRIRPW PHPNPIEVLR AHQLLVRVQK EQKSMYGVRS PRTVIVVTPT YVRTFQALHL TGVMHSLMLV PYDLVWIVVE AGGITNETAS 201: FIAKSGLKTI HLGFDQKMPN TWEDRHKLET KMRLHALRVV REKKLDGIVM FADDSNMHSM ELFDEIQTVK WFGALSVGIL AHSGNADELS SILKNEQGKN 301: KEKPSMPIQG PSCNSSEKLV GWHIFNTQPY AKKTAVYIDE KAPVMPSKME WSGFVLNSRL LWKESLDDKP AWVKDLSLLD DGYAEIESPL SLVKDPSMVE 401: PLGSCGRRVL LWWLRVEARA DSKFPPGWII KSPLEITVPS KRTPWPDSSS ELPAAAIKEA KSNSKPRVSK SKSYKEKQEP KAFDGVKVSA TS |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)