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AT5G66631.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:926961eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB018119
EMBL:CP002688EnsemblPlants:AT5G66631EnsemblPlants:AT5G66631.1entrez:6240924
GeneID:6240924Gramene:AT5G66631.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF573
HOGENOM:HOG000237538InParanoid:B3H4P1InterPro:IPR002885iPTMnet:B3H4P1
KEGG:ath:AT5G66631ncoils:CoilOMA:TESYNIVPaxDb:B3H4P1
Pfam:B3H4P1Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfscan:PS51375PhylomeDB:B3H4P1PRIDE:B3H4P1PRO:PR:B3H4P1
PROSITE:PS51375ProteinModelPortal:B3H4P1Proteomes:UP000006548RefSeq:NP_001119513.1
SMR:B3H4P1STRING:3702.AT5G66631.1TAIR:AT5G66631TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.73324UniProt:B3H4P1
Coordinates (TAIR10) chr5:+:26596207..26598192
Molecular Weight (calculated) 76177.80 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.25
Length 661 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSIIFSNPV KPFNSVIIHQ IRFFSRDPFP NKVQHYLYRA NLIDSIRLSL RSPTTSDRTL ASLLNHRLLD SFVVKNALRS SPSVSSAWSI FKTLSHKSPR
101: FSFETETLHA FATVLAKFQR SSELNSLIGV VNAWKFRNVH FSFMNLLNLY ATAGDFDSVL KTWDEYRCSG EEKKGCTESY NIVMQVYMTL GKDSEAVQTF
201: DQIINEGGIP NSRTFTIMIE HLVKLGNLDA AMKIFETLPL MRITRTLKHY SVLVEAFVDA QRFDEVKTLI AEMKSDGKFP SRRMLEPLKR MREAGFEHET
301: EEFLREMLPD ERIKDISMYS MDNPSDSEDE GDEYKDDVNE AQVKLKPWLD PKALATSLKK WSSDAVTALE EANFVWTNLL VCKMLRNFRA PETAWSFFCW
401: VAIQPGFTHD AYTIERMMAM LARNGQVELV DKLISKVRIE GIKLPFSTIR LIIDLYGISK KPEAAIKVFN EDRTLCGSIS DFNLMLLYSS LLRTLTKCKR
501: NAEALETLED MMLTGVSPDI QTFSGLMYHF ALQGEIQTVE RLFSMVRQIG LEPDPYMLKL LVQAYCRCER SVLAYRVFQD MKDSNLMPDR ETKELLVKSL
601: WREEKRKEAA AVEESYEEEN DNKNSSNVLR LALKGHVWTI SSTDISRVYN LYRDCVLKTS T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)