AT5G63520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.849 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25426300..25429093 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57189.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.03 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTKGKSENS KKMKTDMADM VPIAAMNEDL LHNILLRLPA KSFAFASCVN RFWSSVCNRI LSRPKMISAF SRNPDQLRAG EEVLDKVLSE PIRPQFVIAN 101: ITCGNMEETL TLITERVGSR VPIIVSVVTG ILGKEACNDK AGEVRLHSTS DDELFDVANF AILLTIGYLP GMKVDIIPVI QAKGESGAEM EDKFVMDIRN 201: YMSMVSGHAA APACLILFAE DTHATEPVLH KLDYAMPAET VIVGGQIGEF LHKRGNEPRN VQLQKDDIRV LAGLIFARDR HRPAQAERIQ FDTAISNGMS 301: SVDLRYKAAN VNVSLGPSCP STLLTAKRRG EAEVLDGDQI LDDIDNILEN YIWENDSYLG VIKRRKYSIG LEEKPKIMSS LVFHQVNGSD DQDLLVDGAG 401: IKTGDQFQVY LPDLKVAEAA LNDVSAQLRN LKSKPNKPEV VGGFAFVGSC RGDSFFGCPN ADSSPFLENF PELPFGGIFC DGEIGRSLIL EEGEEKKEVS 501: IQRFLHVYSS VYLIVSYTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)