AT5G63080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25300026..25302321 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54361.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 462 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIQIIGQIE RINGKELSYG DFAERYLAKN QPVVISDLTE DWRAREDWVS ENGNPNLHVF ATHFGKSRVQ VADCDTREFT DQKRLEMSVT EFVEQWTNKD 101: SIEESVLYLK DWHFVKEYPD YTAYQTPPLF SDDWLNVYLD NYQMHEDRDS FQKYDQISCS DYRFVYMGGK GSWTPLHADV FRSYSWSANV CGKKRWLFLP 201: PPQSHLVYDR YMKNCVYDIF EEVNETKFPG FKKTTWLECI QEPGEIIFVP SGWHHQVYNL EDTISINHNW LNAYNLSWVW DLLWKDYKDT EESIEDIRDI 301: CDDFEAICQR NLAANTGMNL NDFFLFMSRF SLGNMVLLQS YSDKHKNLNS CSLAMAQNLL MNLSTILKVM MKMISAGGVT AEEVYLDLRE TLEDPQFLRF 401: VRDMGRTYAR IHMEEEDQFL SSKELLQKLS GLAGPNMQIC SPKDLVEMIN HHNTFSSQIY FI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)