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AT5G62820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G36330.1); Has 258 Blast hits to 258 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 252; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZG2eggNOG:ENOG410YPJZEMBL:AB009053EMBL:BT022001
EMBL:BT023479EMBL:CP002688EnsemblPlants:AT5G62820EnsemblPlants:AT5G62820.1
entrez:836403GeneID:836403GO:GO:0005829GO:GO:0005886
GO:GO:0016021GO:GO:0016226GO:GO:0051536Gramene:AT5G62820.1
hmmpanther:PTHR11615hmmpanther:PTHR11615:SF147HOGENOM:HOG000029077InParanoid:Q501G6
InterPro:IPR006702iPTMnet:Q501G6KEGG:ath:AT5G62820OMA:QMATASI
PaxDb:Q501G6Pfam:PF04535Pfam:Q501G6PhylomeDB:Q501G6
PRIDE:Q501G6PRO:PR:Q501G6ProteinModelPortal:Q501G6Proteomes:UP000006548
RefSeq:NP_201088.1TAIR:AT5G62820TMHMM:TMhelixUniGene:At.5422
UniGene:At.71286UniProt:Q501G6
Coordinates (TAIR10) chr5:-:25223828..25224898
Molecular Weight (calculated) 32613.40 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.24
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMKRTASSN SEAQSYNESP HSPLRFHSPL SDAGDLPESR YVSPEGSPFK IENPKSIVAG NKLTQFSPLP SPIPPPPPQF PPPRRQRNAR VPMNSSSDKS
101: PSSMVVHNSW VREDGGQTTT RKAGAPINGE ESTRTTVNRA RGDDLVSLTA LGFRITEVIL CVISFSIMAA DKTQGWSGDS YDRYKEYRYC LAVNVIAFVY
201: SAFEACDAAC YIAKESYMIN CGFHDLFVFS MDQLLAYLLM SASSCAATRV DDWVSNWGKD EFTQMATASI AVSFLAFGAF AVSALISSYR LFTHASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)