AT5G62180.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.930 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : carboxyesterase 20 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
carboxyesterase 20 (CXE20); INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G45600.1); Has 9350 Blast hits to 9331 proteins in 1590 species: Archae - 113; Bacteria - 5436; Metazoa - 449; Fungi - 960; Plants - 1345; Viruses - 3; Other Eukaryotes - 1044 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:-:24978866..24979849 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 36184.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 327 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSEPSPIADP YAYLNIVNNP DGSITRDLSN FPCTAATPDP SPLNPAVSKD LPVNQLKSTW LRLYLPSSAV NEGNVSSQKL PIVVYYHGGG FILCSVDMQL 101: FHDFCSEVAR DLNAIVVSPS YRLAPEHRLP AAYDDGVEAL DWIKTSDDEW IKSHADFSNV FLMGTSAGGN LAYNVGLRSV DSVSDLSPLQ IRGLILHHPF 201: FGGEERSESE IRLMNDQVCP PIVTDVMWDL SLPVGVDRDH EYSNPTVGDG SEKLEKIGRL RWKVMMIGGE DDPMIDLQKD VAKLMKKKGV EVVEHYTGGH 301: VHGAEIRDPS KRKTLFLSIK NFIFSVL |
||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)