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AT1G73250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.932
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1
Curator
Summary (TAIR10)
encodes a bifunctional 3, 5-epimerase-4-reductase in L-fucose synthesis and converts GDP-D-mannose to GDP-L-fucose in vitro along with MUR1 (GDP-D-mannose 4,6-dehydratase). It is expressed in all tissues examined, but most abundantly in roots and flowers.
Computational
Description (TAIR10)
GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (GER1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G17890.1); Has 26333 Blast hits to 26329 proteins in 2769 species: Archae - 655; Bacteria - 15410; Metazoa - 462; Fungi - 218; Plants - 758; Viruses - 25; Other Eukaryotes - 8805 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G73250-MONOMERBioCyc:MetaCyc:AT1G73250-MONOMERBioGrid:28878BRENDA:1.1.1.271
EC:1.1.1.271eggNOG:COG0451eggNOG:KOG1431EMBL:AB034806
EMBL:AC010556EMBL:AF045286EMBL:AK228837EMBL:BT029480
EMBL:CP002684EnsemblPlants:AT1G73250EnsemblPlants:AT1G73250.1entrez:843659
Gene3D:3.40.50.720GeneID:843659Genevisible:O49213GO:GO:0006005
GO:GO:0016853GO:GO:0042351GO:GO:0050577GO:GO:0050662
Gramene:AT1G73250.1gramene_pathway:1.1.1.271gramene_pathway:PWY-66gramene_plant_reactome:1119620
gramene_plant_reactome:6876641HAMAP:MF_00956hmmpanther:PTHR10366hmmpanther:PTHR10366:SF246
HOGENOM:HOG000168011InParanoid:O49213InterPro:IPR001509InterPro:IPR016040
InterPro:IPR028614KEGG:00051+1.1.1.271KEGG:00520+1.1.1.271KEGG:ath:AT1G73250
KO:K02377OMA:IYRADFIPaxDb:O49213Pfam:O49213
Pfam:PF01370PIR:F96758PRIDE:O49213PRO:PR:O49213
ProteinModelPortal:O49213Proteomes:UP000006548Reactome:R-ATH-6787639RefSeq:NP_177468.2
SMR:O49213STRING:3702.AT1G73250.1SUPFAM:SSF51735TAIR:AT1G73250
tair10-symbols:ATFXtair10-symbols:GER1UniGene:At.1531UniPathway:UPA00128
UniProt:O49213
Coordinates (TAIR10) chr1:-:27545213..27546360
Molecular Weight (calculated) 35571.50 Da
IEP (calculated) 6.58
GRAVY (calculated) -0.15
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETIGSEVS SMSDKSAKIF VAGHRGLVGS AIVRKLQEQG FTNLVLKTHA ELDLTRQADV ESFFSQEKPV YVILAAAKVG GIHANNTYPA DFIGVNLQIQ
101: TNVIHSAYEH GVKKLLFLGS SCIYPKFAPQ PIPESALLTA SLEPTNEWYA IAKIAGIKTC QAYRIQHGWD AISGMPTNLY GPNDNFHPEN SHVLPALMRR
201: FHEAKVNGAE EVVVWGTGSP LREFLHVDDL ADACVFLLDR YSGLEHVNIG SGQEVTIREL AELVKEVVGF EGKLGWDCTK PDGTPRKLMD SSKLASLGWT
301: PKVSLRDGLS QTYDWYLKNV CNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)