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AT5G60460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Preprotein translocase Sec, Sec61-beta subunit protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Preprotein translocase Sec, Sec61-beta subunit protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT3G60540.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111UAReggNOG:KOG3457EMBL:AB011483EMBL:AK118120
EMBL:BT005455EMBL:CP002688EnsemblPlants:AT5G60460EnsemblPlants:AT5G60460.1
entrez:836167GeneID:836167GO:GO:0005784GO:GO:0005794
GO:GO:0005886GO:GO:0006886GO:GO:0016021Gramene:AT5G60460.1
hmmpanther:PTHR13509hmmpanther:PTHR13509:SF4HOGENOM:HOG000211109IntAct:Q9FKK1
InterPro:IPR016482InterPro:IPR030671KEGG:ath:AT5G60460KO:K09481
OMA:RYNTGSTPANTHER:PTHR13509Pfam:PF03911PhylomeDB:Q9FKK1
PIRSF:PIRSF006398PRO:PR:Q9FKK1Proteomes:UP000006548Reactome:R-ATH-381038
RefSeq:NP_200854.1SMR:Q9FKK1STRING:3702.AT5G60460.1TAIR:AT5G60460
TCDB:3.A.5.4.2TMHMM:TMhelixUniGene:At.43597UniProt:Q9FKK1
Coordinates (TAIR10) chr5:-:24317590..24317919
Molecular Weight (calculated) 10866.00 Da
IEP (calculated) 12.07
GRAVY (calculated) -0.01
Length 109 amino acids
Sequence (TAIR10)
(BLAST)
001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)