suba logo
AT5G58270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22318864 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:21296373 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:16618929 (2006): unclear
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC transporter of the mitochondrion 3
Curator
Summary (TAIR10)
Encodes a mitochondrial half-molecule ABC transporter, a member of ATM subfamily. Mutants are dwarfed, chlorotic plants with altered leaf morphology. ATM3 transcription is induced by Cd(II) or Pb(II). Involved in heavy metal resistance. Arabidopsis thaliana has three ATM genes, namely ATM1, ATM2 and ATM3. Only ATM3 has an important function for plant growth. Role in Moco biosynthesis.
Computational
Description (TAIR10)
ABC transporter of the mitochondrion 3 (ATM3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter of the mitochondrion 1 (TAIR:AT4G28630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G58270-MONOMERBioGrid:21183eggNOG:COG5265eggNOG:KOG0057
EMBL:AB019228EMBL:AF287699EMBL:AF360334EMBL:AJ272202
EMBL:AY142686EMBL:CP002688EnsemblPlants:AT5G58270EnsemblPlants:AT5G58270.1
entrez:835939Gene3D:3.40.50.300GeneID:835939Genevisible:Q9LVM1
GO:GO:0005215GO:GO:0005524GO:GO:0005739GO:GO:0005743
GO:GO:0006777GO:GO:0006811GO:GO:0006879GO:GO:0009507
GO:GO:0009555GO:GO:0009658GO:GO:0009941GO:GO:0010288
GO:GO:0010380GO:GO:0016021GO:GO:0042626GO:GO:0046686
GO:GO:0048364GO:GO:0050790GO:GO:0051276GO:GO:0055085
Gramene:AT5G58270.1hmmpanther:PTHR24221hmmpanther:PTHR24221:SF18InParanoid:Q9LVM1
InterPro:IPR003439InterPro:IPR003593InterPro:IPR011527InterPro:IPR017871
InterPro:IPR027417KEGG:ath:AT5G58270KO:K05663OMA:MMYLAAN
PaxDb:Q9LVM1Pfam:PF00005Pfam:PF00664Pfam:Q9LVM1
Pfscan:PS50893Pfscan:PS50929PhylomeDB:Q9LVM1PRIDE:Q9LVM1
PRO:PR:Q9LVM1PROSITE:PS00211PROSITE:PS50893PROSITE:PS50929
ProteinModelPortal:Q9LVM1Proteomes:UP000006548Reactome:R-ATH-1369007RefSeq:NP_200635.1
scanprosite:PS00211SMART:SM00382SMR:Q9LVM1STRING:3702.AT5G58270.1
SUPFAM:SSF52540SUPFAM:SSF90123TAIR:AT5G58270tair10-symbols:ATATM3
tair10-symbols:ATM3tair10-symbols:STA1TCDB:3.A.1.210.8TMHMM:TMhelix
UniGene:At.21228UniPathway:UPA00344UniProt:Q9LVM1
Coordinates (TAIR10) chr5:+:23562168..23567040
Molecular Weight (calculated) 80424.70 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.02
Length 728 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRGSRFVRA PGLLLCRVNL QPQPKIPSFS YSLRSDYRLH NGFSNYIRRN SIRTSPVINA FLSDNSPSPS PSPSPIRFVQ RSSMLNGRLF STSTPNPDQT
101: TTKTKEIKTT SSDSDSAMAD MKILRTLAGY LWMRDNPEFR FRVIAALGFL VGAKVLNVQV PFLFKLAVDW LASATGTGAS LTTFAATNPT LLTVFATPAA
201: VLIGYGIART GSSAFNELRT AVFSKVALRT IRSVSRKVFS HLHDLDLRYH LSRETGGLNR IIDRGSRAIN FILSAMVFNV VPTILEISMV SGILAYKFGA
301: AFAWITSLSV GSYIVFTLAV TQWRTKFRKA MNKADNDAST RAIDSLINYE TVKYFNNEGY EAEKYDQFLK KYEDAALQTQ RSLAFLNFGQ SIIFSTALST
401: AMVLCSQGIM NGQMTVGDLV MVNGLLFQLS LPLNFLGSVY RETIQSLVDM KSMFQLLEEK SDITNTSDAK PLVLKGGNIE FENVHFSYLP ERKILDGISF
501: VVPAGKSVAI VGTSGSGKST ILRMLFRFFD TDSGNIRIDG QDIKEVRLDS LRSSIGVVPQ DTVLFNDTIF HNIHYGRLSA TEEEVYEAAR RAAIHETISN
601: FPDKYSTIVG ERGLKLSGGE KQRVALARTF LKSPAILLCD EATSALDSTT EAEILNALKA LASNRTSIFI AHRLTTAMQC DEIVVLENGK VVEQGPHDEL
701: LGKSGRYAQL WTQQNSSVDM LDAAIKLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)