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AT5G54190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30962257 (2019): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : protochlorophyllide oxidoreductase A
Curator
Summary (TAIR10)
light-dependent NADPH:protochlorophyllide oxidoreductase A
Computational
Description (TAIR10)
protochlorophyllide oxidoreductase A (PORA); FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process, response to ethylene stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase B (TAIR:AT4G27440.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G54190-MONOMERBioCyc:ARA:GQT-971-MONOMERBioGrid:20751BRENDA:1.3.1.33
EC:1.3.1.33eggNOG:COG1028eggNOG:KOG1208EMBL:AB013387
EMBL:AK317329EMBL:BT003853EMBL:BT005080EMBL:CP002688
EMBL:U29699EnsemblPlants:AT5G54190EnsemblPlants:AT5G54190.1entrez:835507
Gene3D:3.40.50.720GeneID:835507Genevisible:Q42536GO:GO:0009507
GO:GO:0009534GO:GO:0009723GO:GO:0009941GO:GO:0015979
GO:GO:0015995GO:GO:0016630gramene_pathway:1.3.1.33gramene_pathway:CHLOROPHYLL-SYN
hmmpanther:PTHR24322hmmpanther:PTHR24322:SF393InParanoid:Q42536IntAct:Q42536
InterPro:IPR002347InterPro:IPR005979InterPro:IPR016040KEGG:00860+1.3.1.33
KEGG:ath:AT5G54190KO:K00218OMA:NFRRSDMPANTHER:PTHR24322
PaxDb:Q42536Pfam:PF00106Pfam:Q42536PhylomeDB:Q42536
PRIDE:Q42536PRINTS:PR00081PRO:PR:Q42536ProteinModelPortal:Q42536
Proteomes:UP000006548RefSeq:NP_001032072.1RefSeq:NP_200230.1SMR:Q42536
STRING:3702.AT5G54190.1SUPFAM:SSF51735TAIR:AT5G54190tair10-symbols:PORA
TIGRfam:TIGR01289TIGRFAMs:TIGR01289UniGene:At.23877UniPathway:UPA00668
UniProt:Q42536
Coordinates (TAIR10) chr5:-:21991183..21992773
Molecular Weight (calculated) 43865.40 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.17
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)