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AT2G05070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:24012629 (2013): nucleus
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II light harvesting complex gene 2.2
Curator
Summary (TAIR10)
Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.
Computational
Description (TAIR10)
photosystem II light harvesting complex gene 2.2 (LHCB2.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: guard cell, juvenile leaf, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 2376 Blast hits to 2314 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2060; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IU0XeggNOG:ENOG410ZHBUEMBL:AC007211EMBL:AF134123
EMBL:AY054218EMBL:AY062563EMBL:AY066036EMBL:AY093372
EMBL:CP002685EnsemblPlants:AT2G05070EnsemblPlants:AT2G05070.1entrez:815055
Gene3D:1.10.3460.10GeneID:815055GO:GO:0005774GO:GO:0009416
GO:GO:0009507GO:GO:0009522GO:GO:0009534GO:GO:0009535
GO:GO:0009579GO:GO:0009768GO:GO:0009941GO:GO:0010287
GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0031409
GO:GO:0046872Gramene:AT2G05070.1hmmpanther:PTHR21649hmmpanther:PTHR21649:SF8
HOGENOM:HOG000238032IntAct:Q9S7J7InterPro:IPR001344InterPro:IPR022796
InterPro:IPR023329KEGG:ath:AT2G05070KO:K08913OMA:CAIQQSA
PANTHER:PTHR21649Pfam:PF00504PhylomeDB:Q9S7J7PIR:T52324
Proteomes:UP000006548RefSeq:NP_178582.1SMR:Q9S7J7STRING:3702.AT2G05070.1
SUPFAM:0043399SUPFAM:SSF103511TAIR:AT2G05070tair10-symbols:LHCB2
tair10-symbols:LHCB2.2UniGene:At.48420UniGene:At.63397UniGene:At.72525
UniProt:Q9S7J7
Coordinates (TAIR10) chr2:-:1799436..1800329
Molecular Weight (calculated) 28622.10 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.09
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSAIQQSS FAGQTALKPS SDLIQKVGVL GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)