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AT5G51640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.776
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF828)
Curator
Summary (TAIR10)
Encodes leaf-senescence-related protein. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
YELLOW-LEAF-SPECIFIC GENE 7 (YLS7); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 18 (TAIR:AT4G25360.2); Has 1342 Blast hits to 1319 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IENQeggNOG:ENOG410XREJEMBL:AB018109EMBL:AB047810
EMBL:AY080801EMBL:AY133873EMBL:CP002688EnsemblPlants:AT5G51640
EnsemblPlants:AT5G51640.1entrez:835238GeneID:835238Genevisible:Q9FHM0
GO:GO:0005794GO:GO:0010150GO:GO:0016021GO:GO:0016413
GO:GO:0071554Gramene:AT5G51640.1hmmpanther:PTHR32285hmmpanther:PTHR32285:SF18
HOGENOM:HOG000238130InParanoid:Q9FHM0InterPro:IPR025846InterPro:IPR026057
InterPro:IPR029962InterPro:IPR029983KEGG:ath:AT5G51640OMA:LTILRTW
PANTHER:PTHR32285PANTHER:PTHR32285:SF18PaxDb:Q9FHM0Pfam:PF13839
Pfam:PF14416Pfam:Q9FHM0PhylomeDB:Q9FHM0PRIDE:Q9FHM0
PRO:PR:Q9FHM0Proteomes:UP000006548RefSeq:NP_199977.1STRING:3702.AT5G51640.1
TAIR:AT5G51640tair10-symbols:TBL17tair10-symbols:YLS7TMHMM:TMhelix
UniGene:At.7818UniProt:Q9FHM0
Coordinates (TAIR10) chr5:-:20975401..20977378
Molecular Weight (calculated) 56528.70 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.57
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLASPRVSN SKTTVLLFPR KVSSIAFAIG GLTSFVIFAS LLLFTYPIGS SVTDYFYRTE TTQNVQFHHS IHDPDRNPSP VSSSESPPVL TQDSDDKVLP
101: KGSHDSNDVR LGEETNSGKS SNVSIDEEAT QDHVETECDL YHGNWFYDPM GPLYTNNSCP LLTQMQNCQG NGRPDKGYEN WRWKPSQCDL PRFDAKKFLE
201: LMRGKTLAFI GDSVARNQME SMMCLLWQVE TPVNRGNRKM QRWYFRSSSV MIARMWSSWL VHQFNEPFGF ATDGVTKLKL DQPDERIIEA LPNFDVVVLS
301: SGHWFAKQSV YILNDQIVGG QLWWPDKSKP EKINNVEAFG ISVETIIKAM AKHPNYTGLT ILRTWSPDHY EGGAWNTGGS CTGKVEPLPP GNLVTNGFTE
401: IMHEKQATGF HRAVADDKLG NRSKKLKLMD ITEAFGYRHD GHPGPYRSPD PKKITKRGPD GQPPPQDCLH WCMPGPVDTW NEMVLEIIRR DFEGRQSSPS
501: S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)