AT5G49830.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.453 nucleus 0.302 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : exocyst complex component 84B | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst complex component 84B (EXO84B); LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: Vps51/Vps67 family (components of vesicular transport) protein (TAIR:AT1G10385.1); Has 361 Blast hits to 284 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 56; Plants - 154; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20250803..20254766 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89764.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.08 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 814 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAKTARSKA TPTKENGVRV EEGLSLFKSD KFDADAYVQS KCSINEKEIV IVEWILGSSR FYTLEKMMSN VTILIACMVV LVIFWKKIQF GYGIGYKGCL 101: VCVVTFCDGD IKQLCSYLLD LKRASAEEMR RSVYANYPAF IRTSKEISDL EGELSSIRNL LSTQATLIHG LADGVNIDDD KVSDESLANG LLNFEDNGLS 201: DLEKWATEFP DHLDALLAER RVDEALAAFD EGEILVSQAN EKHTLSSSVL SSLQFAIAER KQKLADQLAK AACQPSTRGG ELRSAIAALK RLGDGPRAHT 301: VLLDAHFQRY QYNMQSLRPS STSYGGAYTA ALSQLVFSAI SQASSDSLGI FGKEPAYSSE LVTWATKQTE AFSLLVKRHA LASSAAAGGL RAAAECAQIA 401: LGHCSLLEAR GLSLCPVLLK HFKPIVEQAL EANLKRIEEN TAAMAAADDW VLTSPPAGSR HASTAFQNKL TSSAHRFNLM VQDFFEDVGP LLSMQLGSKA 501: LEGLFRVFNS YVDVLVRALP GSIEEEDPNF ESSCNKIVQM AETEANQLAL LANASLLADE LLPRAAMKLS LDQTGQRTDD LRRPLDRQNR NPEQREWKRR 601: LLSTVDKLKD AFCRQHALDL IFTEEGDSHL SADMYVNIDE NGEDVDFFPS LIFQELFAKL NRMASLAADM FVGRERFAIS LLMRLTETVI LWLSGDQSFW 701: DDIEEGPRPL GPLGLRQLYL DMKFVICFAS QGRYLSRNLH RGTNEIISKA LAAFTATGID PYSELPEDDW FNDICVDAME RLSGKTKGNN GDVHSPTASV 801: SAQSVSSARS HGSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)