AT5G45920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.916 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SGNH hydrolase-type esterase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT5G62930.1); Has 723 Blast hits to 722 proteins in 270 species: Archae - 0; Bacteria - 249; Metazoa - 79; Fungi - 169; Plants - 173; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18622822..18624677 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27155.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.60 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 241 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMRRKIFLFG DSITEESFSD GGWGASLADL LRRKADMVLR GYSGYNTRWA LKVVERVFPV AEEDGGDSPA AVTVFFGAND ACLPERCSGF QHVPLHEYKQ 101: NLRSIVSFLK NRWPQTAIIL ITPPPIDEEA RLRYPYIENT TGLPERTNEV AGLYAKACIA VAEECQISVT DLWSKMQQIP NWQTECLWDG LHLSRVGNKV 201: VFEEVAKKLK EEGIGAEDLA VDLPLIEDVD PKDPLKSFDE F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)