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AT5G43330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lactate/malate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT1G04410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19601EC:1.1.1.37eggNOG:COG0039eggNOG:KOG1496
EMBL:AB025638EMBL:AY072137EMBL:AY091220EMBL:CP002688
EnsemblPlants:AT5G43330EnsemblPlants:AT5G43330.1entrez:834351Gene3D:3.40.50.720
Gene3D:3.90.110.10GeneID:834351Genevisible:P57106GO:GO:0005829
GO:GO:0005886GO:GO:0005975GO:GO:0006099GO:GO:0006108
GO:GO:0009506GO:GO:0030060GO:GO:0048046Gramene:AT5G43330.1
gramene_pathway:1.1.1.37gramene_pathway:GLYOXYLATE-BYPASSgramene_pathway:PWY-5690gramene_pathway:PWYQT-4481
hmmpanther:PTHR23382hmmpanther:PTHR23382:SF7HOGENOM:HOG000220953InParanoid:P57106
InterPro:IPR001236InterPro:IPR001252InterPro:IPR001557InterPro:IPR010945
InterPro:IPR011274InterPro:IPR015955InterPro:IPR016040InterPro:IPR022383
iPTMnet:P57106KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37
KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37KEGG:00720+1.1.1.37
KEGG:ath:AT5G43330KO:K00025MINT:MINT-8062783OMA:ACFDAVK
PANTHER:PTHR23382PaxDb:P57106Pfam:P57106Pfam:PF00056
Pfam:PF02866PhylomeDB:P57106PIRSF:PIRSF000102PRIDE:P57106
PRO:PR:P57106PROSITE:PS00068ProteinModelPortal:P57106Proteomes:UP000006548
Reactome:R-ATH-70263RefSeq:NP_199147.1scanprosite:PS00068SMR:P57106
STRING:3702.AT5G43330.1SUPFAM:SSF51735SUPFAM:SSF56327TAIR:AT5G43330
TIGRfam:TIGR01758TIGRfam:TIGR01759TIGRFAMs:TIGR01758TIGRFAMs:TIGR01759
UniGene:At.27775UniProt:P57106
Coordinates (TAIR10) chr5:+:17390552..17392449
Molecular Weight (calculated) 35677.10 Da
IEP (calculated) 6.78
GRAVY (calculated) 0.03
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)