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AT5G42510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance-responsive (dirigent-like protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT5G42500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JD2ZeggNOG:ENOG410YIMFEMBL:AB016888EMBL:BT030625
EMBL:CP002688EnsemblPlants:AT5G42510EnsemblPlants:AT5G42510.1entrez:834258
GeneID:834258Genevisible:Q9FIG6GO:GO:0048046Gramene:AT5G42510.1
hmmpanther:PTHR21495hmmpanther:PTHR21495:SF71HOGENOM:HOG000240123InParanoid:Q9FIG6
InterPro:IPR004265KEGG:ath:AT5G42510OMA:GHFRFARPaxDb:Q9FIG6
Pfam:PF03018Pfam:Q9FIG6PhylomeDB:Q9FIG6PRIDE:Q9FIG6
PRO:PR:Q9FIG6ProteinModelPortal:Q9FIG6Proteomes:UP000006548RefSeq:NP_199066.1
SMR:Q9FIG6STRING:3702.AT5G42510.1TAIR:AT5G42510TMHMM:TMhelix
UniGene:At.65624UniProt:Q9FIG6
Coordinates (TAIR10) chr5:-:16998268..16998816
Molecular Weight (calculated) 20132.50 Da
IEP (calculated) 9.41
GRAVY (calculated) 0.19
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKRFLLLLP LLSSILLLAV SVTAYSTTTP YQGYKPEKFT HLHFYFHDVI SGDKPTAVKV AEARPTTTLN VKFGVIMIAD DPLTEGPDPS SKEVGRAQGM
101: YASTAMKDIV FTMVFNYVFT AGEFNGSTIA VYGRNDIFSK VRELPIIGGT GAFRFARGYA LPKTYKIVGL DAVVEYNVFI WH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)