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AT5G42090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lung seven transmembrane receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lung seven transmembrane receptor family protein; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT5G18520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQAQeggNOG:KOG2569EMBL:AB017067EMBL:AY059846
EMBL:AY093263EMBL:CP002688EnsemblPlants:AT5G42090EnsemblPlants:AT5G42090.1
entrez:834214GeneID:834214GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0016021Gramene:AT5G42090.1hmmpanther:PTHR21229
hmmpanther:PTHR21229:SF22InterPro:IPR009637KEGG:ath:AT5G42090OMA:QDWVTWK
PANTHER:PTHR21229Pfam:PF06814PhylomeDB:Q9FHX6PRO:PR:Q9FHX6
Proteomes:UP000006548RefSeq:NP_199024.1STRING:3702.AT5G42090.1TAIR:AT5G42090
TMHMM:TMhelixUniGene:At.21158UniGene:At.67140UniProt:Q9FHX6
Coordinates (TAIR10) chr5:+:16826830..16828149
Molecular Weight (calculated) 50228.20 Da
IEP (calculated) 5.75
GRAVY (calculated) 0.30
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSSRFSSI LILLLISISI ASAEIRKSEI RSDDRPIIPL DEFGFTHSGR LELDASKIWL SNSNPDLDLS KVGFFLCTRD AWVHVIQQLE EEEITCALQS
101: DLVKHVFTFN NLKGGDKSRF STVFTENDAD QYSLVFANCL QQVKISMDVR SAMYNLEGKK GGRDYLSAGR TVLPKVYFLF SVIYFSLAAT WIYVLYKKRL
201: TVFAIHFFML GVVVLKALNL LCEAEDKSYI KKTGTAHGWD VLFYIFNFLK GITLFTLIVL IGTGWSFLKP YLQDKEKKVL MIVIPLQVVA NFAQVVIDET
301: GPYGQDWVTW KQIFLLVDVV CCCAVLFPIV WSIKNLREAA KTDGKAAVNL VKLTLFRQYY IVVICYIYFT RVVVYALETI TSYKYMWTSV VASELATLAF
401: YLFTGYKFRP EVHNPYFVVD DEEEEAAAEA LKLEDEFEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)