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AT5G40160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24124904 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Encodes ankyrin repeat protein EMB506. Mutations in this locus result in embryo lethality.
Computational
Description (TAIR10)
embryo defective 506 (EMB506); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 90387 Blast hits to 29284 proteins in 1374 species: Archae - 134; Bacteria - 8440; Metazoa - 46466; Fungi - 7182; Plants - 3258; Viruses - 1346; Other Eukaryotes - 23561 (source: NCBI BLink).
Protein Annotations
BioGrid:19265eggNOG:COG0666eggNOG:KOG0504EMBL:AB010699
EMBL:AF026167EMBL:AY063792EMBL:AY117280EMBL:CP002688
EnsemblPlants:AT5G40160EnsemblPlants:AT5G40160.1entrez:834014Gene3D:1.25.40.20
GeneID:834014Genevisible:Q9SQK3GO:GO:0009507Gramene:AT5G40160.1
hmmpanther:PTHR24198hmmpanther:PTHR24198:SF94HOGENOM:HOG000241764InParanoid:Q9SQK3
IntAct:Q9SQK3InterPro:IPR002110InterPro:IPR020683KEGG:ath:AT5G40160
OMA:PSHGDVFPaxDb:Q9SQK3Pfam:PF12796Pfam:Q9SQK3
Pfscan:PS50088Pfscan:PS50297PhylomeDB:Q9SQK3PRIDE:Q9SQK3
PRO:PR:Q9SQK3PROSITE:PS50088PROSITE:PS50297ProteinModelPortal:Q9SQK3
Proteomes:UP000006548RefSeq:NP_198832.1SMART:SM00248SMR:Q9SQK3
STRING:3702.AT5G40160.1SUPFAM:SSF48403TAIR:AT5G40160tair10-symbols:EMB139
tair10-symbols:EMB506UniGene:At.48057UniGene:At.68513UniGene:At.70297
UniProt:Q9SQK3
Coordinates (TAIR10) chr5:-:16062726..16064301
Molecular Weight (calculated) 35462.90 Da
IEP (calculated) 4.87
GRAVY (calculated) -0.60
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)