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AT5G40140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein with ARM repeat domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 38 (TAIR:AT5G65200.1); Has 3757 Blast hits to 2892 proteins in 207 species: Archae - 0; Bacteria - 10; Metazoa - 408; Fungi - 448; Plants - 2529; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410IIQVeggNOG:ENOG4111IM2EMBL:AB010699
EMBL:CP002688EnsemblPlants:AT5G40140EnsemblPlants:AT5G40140.1entrez:834011
Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:834011Genevisible:Q9FL17
GO:GO:0004842GO:GO:0016874Gramene:AT5G40140.1hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF127HOGENOM:HOG000239874InParanoid:Q9FL17InterPro:IPR000225
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024
KEGG:ath:AT5G40140OMA:CTPRILSPaxDb:Q9FL17Pfam:PF00514
Pfam:PF04564Pfam:Q9FL17Pfscan:PS50176Pfscan:PS51698
PRIDE:Q9FL17PRO:PR:Q9FL17PROSITE:PS50176PROSITE:PS51698
ProteinModelPortal:Q9FL17Proteomes:UP000006548RefSeq:NP_198830.1SMART:SM00185
SMART:SM00504SMR:Q9FL17STRING:3702.AT5G40140.1SUPFAM:SSF48371
SUPFAM:SSF57850TAIR:AT5G40140UniGene:At.55272UniPathway:UPA00143
UniProt:Q9FL17
Coordinates (TAIR10) chr5:+:16057347..16058999
Molecular Weight (calculated) 60221.80 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.16
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)