AT5G28350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:10320301..10326781 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 126783.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.54 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||
| Length | 1127 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MYMAYGWPQV IPLLPGSCPS SQRVVYLKLA GRLLLVVSPS HLELWGSSQQ RVRLGKYMRD DKSVREEGEN LQAVWSPDAK LIAVLTSSFF LHIYKIKFTD 0101: KRVKPGERQP SELCFATISL LLSEQVPFAG KDLSVSNFVR DSKTMLLGLS DGSLYSISWK GEFGGAFSIG SHPSDSNDDR LLSYTLGNGL VSGVASPTLA 0201: SDDKFSTNPA IVQLELCTRS KLLFVLNSDG QLVVCSVNKK GLKYTESIRA EKKVGGDAVC ASVASEQQIL AVGTRKGMVE LYDLSHSISL LRTVSLHDWG 0301: YSADYTGPVN NIAWTPDNSA FAVGWKSRGL AVWSVSGCRL MSTVRQIGLT STSSPKINPK QDCKYEPLMS GTSAIQWDEY GYRLFATEEA SYDRILAFSF 0401: GKCCLNRGVS GKTYVRQVMY GDDRLLMVQA EDTDELKLLH LKLPVSYISQ NWPVQHVAAS EDGKYLAFAG LHGLILYDIR FKKWRVFGDV SQEQQIHCKG 0501: LLWLGKIVVI CNYIEASETY ELLFYPRYHL DQSSLLCRKV LLGKPMVMDV YQDYILVSYL PFFIHVYHVK IYGELTPSSK ADLQLSTVRE LSIMTAKSHP 0601: AAMGFVPDQH LREGELDNDN LSSDLSDREP SRCLILRGNG ELSLLDLVDG RERELTDSVE LFWVTCGQSE EKTNLVEEVS WLDYGHRGMQ VWYPSLGDDP 0701: FMQEDFLQLD PELEFDREVY PLGLLPNVGV VVGVSQRMSF SASAEFACFE PTPQAQTILH CLLRHLLQRD KNEEALLLAQ LSAEKPHFSH CLEWLLFTVF 0801: DAEISRPNPN RNQISGPGHL KKLSLLRKAC DLIKKFPEYY DVVVNVARKT DARHWADLFS AAGISTTLFE DCFQRRWYRT AACYILVIAK LEGVAVSQYC 0901: ALRLLQATLD ESLYDLAGEL VRFLLRSGRD IEQAPTESDS LSPKLLGFLI FGSSHKKSSL DKSSSFKEQS PHVASVKSIL ESHASYLMSG KELSKLVAFV 1001: KGTQFDIVDF LQRERYGCAQ LQNFAAGLEL IGQKLQMSEL QNRLDAEFLL AQMCSVKFKE WIVVLATLLQ RSEVLYDIFR YDLRLWKAYS VTLESHLAFA 1101: HYHDLLQILE AKLSATSREE SNRGSIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)