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AT5G27410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT3G05190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-278-MONOMERBioCyc:ARA:GQT-279-MONOMEReggNOG:COG0115eggNOG:KOG0975
eggNOG:KOG2497EMBL:AC007123EMBL:AF367323EMBL:BT000517
EMBL:CP002688EnsemblPlants:AT5G27410EnsemblPlants:AT5G27410.1entrez:832800
ExpressionAtlas:Q9ASR4GeneID:832800Genevisible:Q9ASR4GO:GO:0003824
hmmpanther:PTHR11825hmmpanther:PTHR11825:SF7HOGENOM:HOG000276706InParanoid:Q9ASR4
InterPro:IPR001544InterPro:IPR027417PANTHER:PTHR11825PaxDb:Q9ASR4
Pfam:PF01063Pfam:Q9ASR4PhylomeDB:Q9ASR4PRIDE:Q9ASR4
PRO:PR:Q9ASR4ProteinModelPortal:Q9ASR4Proteomes:UP000006548RefSeq:NP_568496.1
SMR:Q9ASR4STRING:3702.AT5G27410.2SUPFAM:SSF52540SUPFAM:SSF56752
TAIR:AT5G27410UniGene:At.21583UniProt:Q9ASR4
Coordinates (TAIR10) chr5:+:9678821..9682468
Molecular Weight (calculated) 62899.80 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.27
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVIHAWSAP RSLSTTLMYS FAQRDDIEVL DEPLYAAFLK STGVDRPYKD ELLSKMECDG EKVVKDIIYG PGKKKYRFCK HISKQRLLGL PSELMSEGKH
101: FILIRNPLNI LPSFEKIHPS SFHELGLGEL VSIYSDLCQM GTPPAIIDAD ELQRDPEATL RSLCDDLEIP FQASMLKWEA GPIPEDGLWA PWWYETLHKS
201: TGFSSPQKYP QTFPLMHYDL LEQCLPLYNI LRCHMKHKSS LLSSTLPPPS LPVPENAKLL AWVGDEIVPR EMAKVSVFDS VVQGGDSVWE GLRIYKGKVF
301: KLEEHLDRLS DSAKALAFNN VPTREEIKEA IFRTLITNGM FDNTHIRLSL TRGKKVTSGM SPAFNRYGCT LIVLAEWKPP VYDNDGGIVL VTATTRRNSP
401: NNLDSKIHHN NLLNNILAKI ESNNANVDDA IMLDKDGFVS ETNATNIFMV KKDRVLTPHA DYCLPGITRA TVMELVVKEN FILEERRISL SEFHTADEVW
501: TTGTMGELSP VVKIDGRVIG EGKVGPVTRR LQNAYKKLTD GSGVPIPTYQ EVKNLEPCV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)