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AT5G05980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24124904 (2013): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DHFS-FPGS homolog B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHFS-FPGS homolog B (DFB); CONTAINS InterPro DOMAIN/s: Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, central (InterPro:IPR013221), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: DHFS-FPGS homolog D (TAIR:AT3G55630.3); Has 7626 Blast hits to 7624 proteins in 2505 species: Archae - 43; Bacteria - 4775; Metazoa - 165; Fungi - 350; Plants - 132; Viruses - 0; Other Eukaryotes - 2161 (source: NCBI BLink).
Protein Annotations
BRENDA:6.3.2.17EC:6.3.2.17eggNOG:COG0285eggNOG:KOG2525
EMBL:AB017060EMBL:AJ250873EMBL:AK317446EMBL:CP002688
EnsemblPlants:AT5G05980EnsemblPlants:AT5G05980.1entrez:830484Gene3D:3.40.1190.10
Gene3D:3.90.190.20GeneID:830484Genevisible:F4K2A1GO:GO:0004326
GO:GO:0005524GO:GO:0005829GO:GO:0006730GO:GO:0009507
GO:GO:0010449GO:GO:0046901GO:GO:0048364GO:GO:0048767
GO:GO:1904961gramene_pathway:6.3.2.17gramene_pathway:PWY-2161gramene_pathway:PWY-2161B-PMN
gramene_pathway:PWY-3742gramene_pathway:PWY-3841gramene_plant_reactome:1119484gramene_plant_reactome:6873865
hmmpanther:PTHR11136hmmpanther:PTHR11136:SF6HOGENOM:HOG000181278InParanoid:F4K2A1
InterPro:IPR001645InterPro:IPR004101InterPro:IPR013221InterPro:IPR018109
InterPro:IPR023600iPTMnet:F4K2A1KEGG:00790+6.3.2.17KEGG:ath:AT5G05980
KO:K01930OMA:YTESRTSPANTHER:PTHR11136PaxDb:F4K2A1
Pfam:F4K2A1Pfam:PF08245PIRSF:PIRSF038895PRIDE:F4K2A1
PRO:PR:F4K2A1PROSITE:PS01011ProteinModelPortal:F4K2A1Proteomes:UP000006548
Reactome:R-ATH-196757RefSeq:NP_001031840.1RefSeq:NP_196217.2scanprosite:PS01011
SMR:F4K2A1STRING:3702.AT5G05980.1SUPFAM:SSF53244SUPFAM:SSF53623
TAIR:AT5G05980tair10-symbols:ATDFBtair10-symbols:DFBtair10-symbols:FPGS1
TIGRfam:TIGR01499TIGRFAMs:TIGR01499UniGene:At.32924UniGene:At.66718
UniPathway:UPA00850UniProt:F4K2A1
Coordinates (TAIR10) chr5:-:1799738..1804441
Molecular Weight (calculated) 63348.90 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.16
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MFAVSIVPRT TSCRLSSAFL CQLSIPLTLR LHHHYQHHQP HLPSPLSFQI HSLRKQIDMA AQGGDSYEEA LAALSSLITK RSRADKSNKG DRFELVFDYL
101: KLLDLEEDIL KMNVIHVAGT KGKGSTCTFT ESIIRNYGFR TGLFTSPHLI DVRERFRLDG VDISEEKFLG YFWWCYNRLK ERTNEEIPMP TYFRFLALLA
201: FKIFAAEEVD AAILEVGLGG KFDATNAVQK PVVCGISSLG YDHMEILGDT LGKIAGEKAG IFKLGVPAFT VPQPDEAMRV LEEKASETEV NLEVVQPLTA
301: RLLSGQKLGL DGEHQYVNAG LAVSLASIWL QQIGKLEVPS RTQMSILPEK FIKGLATASL QGRAQVVPDQ YTESRTSGDL VFYLDGAHSP ESMEACAKWF
401: SVAVKGDNQS GSSGHLVNGS AGSSHDKWSN ETCEQILLFN CMSVRDPNLL LPHLKNMCAK YGVNFKKALF VPNMSVYHKV GTAADLPEND PQVDLSWQFT
501: LQKVWESLVQ SERDGEKDGE SDGNSEVFTS LPMAIKCLRD TVHESSSATR FQVLVTGSLH LVGDVLRLIR K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)