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AT5G27220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.663
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Frigida-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Frigida-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JCKReggNOG:ENOG410ZTTFEMBL:AF007271EMBL:CP002688
EnsemblPlants:AT5G27220EnsemblPlants:AT5G27220.1entrez:832780GeneID:832780
GO:GO:0005829Gramene:AT5G27220.1hmmpanther:PTHR31791hmmpanther:PTHR31791:SF13
HOGENOM:HOG000113942InterPro:IPR012474KEGG:ath:AT5G27220ncoils:Coil
OMA:CSVEERSPfam:PF07899PhylomeDB:O04650PIR:T01799
Proteomes:UP000006548RefSeq:NP_198074.1TAIR:AT5G27220UniGene:At.30819
UniProt:O04650
Coordinates (TAIR10) chr5:+:9578757..9582752
Molecular Weight (calculated) 135838.00 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.59
Length 1181 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEEIKLENEI RLCDVKANNI RKTMDMIKSQ ASDVLILNLQ WCDFEEHLKS ASEKLELRFR ELVLKEVELQ NRSFALEERA KVVEAAEAEM GDLEMKASGF
0101: RSEVEEKREE LGCLRKSLEE CSVEERSKRG QLSEIVELLR KSQVDLDLKG EELRQMVTHL ERYRVEVKEE KEHLRRTDNG RRELEEEIER KTKDLTLVMN
0201: KIVDCDKRIE TRSLELIKTQ GEVELKEKQL DQMKIDLEKY CVDVNAEKKN LGRTQTHRRK LEEEIERKTK DLTLVMDKIA ECEKLFERRS LELIKTQGEV
0301: ELKGKQLEQM DIDLERHRGE VNVVMEHLEK SQTRSRELAE EIERKRKELT AVLDKTAEYG KTIELVEEEL ALQQKLLDIR SSELVSKKKE LDGLSLDLEL
0401: VNSLNNELKE TVQRIESKGK ELEDMERLIQ ERSGHNESIK LLLEEHSEEL AIKEERHNEI AEAVRKLSLE IVSKEKTIQQ LSEKQHSKQT KLDSTEKCLE
0501: ETTAELVSKE NELCSVKDTY RECLQNWEIK EKELKSFQEE VKKIQDSLKD FQSKEAELVK LKESLTEHEK ELGLKKKQIH VRSEKIELKD KKLDAREERL
0601: DKKDEQLKSA EQKLAKCVKE YELNAKKLAS FCQQNNPDQQ VDLVRDASVC DEKTLQLLLR GHLKKCDQLH LDVLRALKAS SDPAKLVLNT IQRLHEKMAV
0701: TKLDPDSVRR GSICLLECLM DMSPEPKTEV QVEAIKSVTE WKNTTLVKAE NPVEVLGFLH FLSAFSLAYT FDADKVQNLF DAAFLRQYAP SLCEALGVSS
0801: LAPVNNVLSL DDKPEQQPPE APIINSSDSR STNVQETIAS SHLGNVDVLL DPEGSTSFSP NEVFTGLQGM IDPASYVLNV VNDELLGAQQ RGELGLAEPV
0901: IKTLIPLLEE LPRVVKSSKH LLSDALQVAT RWSWMMGNST QMSPLEAWGF LQLIVAYGLV HATSQDNTLR FASYVAHFKQ APKLFESLGL SYAMPNLVKK
1001: LLDERHYFMA IRFIFYFKLK FNFSPLELLK DEIITLRVST KEKRRLDSQA EDRDAAKLKD IIELIEDFKL DIDLPVELIV KFMVPRENQN ENQYVVSSFV
1101: PVQSPQVHMQ ASHGSNPTFP TSLGTSPNQQ VLDLETYQAG GSIAFQAQSS HHTGYKRTRM DPSVSRPVIR PCFNPSSYGR Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)