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AT5G53660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : growth-regulating factor 7
Curator
Summary (TAIR10)
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.
Computational
Description (TAIR10)
growth-regulating factor 7 (GRF7); CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: growth-regulating factor 8 (TAIR:AT4G24150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20691eggNOG:ENOG410JDX1eggNOG:ENOG4111821EMBL:AB015476
EMBL:AB493791EMBL:AK176109EMBL:BT010882EMBL:CP002688
EnsemblPlants:AT5G53660EnsemblPlants:AT5G53660.1entrez:835447GeneID:835447
Genevisible:Q9FJB8GO:GO:0005524GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0010114GO:GO:0010218GO:GO:0048366
GO:GO:0080167Gramene:AT5G53660.1hmmpanther:PTHR31602hmmpanther:PTHR31602:SF16
HOGENOM:HOG000152500InParanoid:Q9FJB8InterPro:IPR014977InterPro:IPR014978
InterPro:IPR031137KEGG:ath:AT5G53660OMA:YKYMIASPANTHER:PTHR31602
PaxDb:Q9FJB8Pfam:PF08879Pfam:PF08880Pfam:Q9FJB8
Pfscan:PS51666Pfscan:PS51667PhylomeDB:Q9FJB8PRIDE:Q9FJB8
PRO:PR:Q9FJB8PROSITE:PS51666PROSITE:PS51667Proteomes:UP000006548
RefSeq:NP_200177.1SMART:SM00951STRING:3702.AT5G53660.1TAIR:AT5G53660
tair10-symbols:AtGRF7tair10-symbols:GRF7UniGene:At.29543UniProt:Q9FJB8
Coordinates (TAIR10) chr5:+:21794636..21795929
Molecular Weight (calculated) 40412.50 Da
IEP (calculated) 8.18
GRAVY (calculated) -0.66
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFLKVSDKT TIPYRSDSLF SLNQQQYKES SFGFRDMEIH PHPTPYAGNG LLGCYYYYPF TNAQLKELER QAMIYKYMIA SIPVPFDLLV SSPSSASPCN
101: NKNIAGDLEP GRCRRTDGKK WRCAKEVVSN HKYCEKHLHR GRPRSRKHVE PPYSRPNNNG GSVKNRDLKK LPQKLSSSSI KDKTLEPMEV SSSISNYRDS
201: RGSEKFTVLA TTEQENKYLN FIDVWSDGVR SSEKQSTTST PVSSSNGNLS LYSLDLSMGG NNLMGQDEMG LIQMGLGVIG SGSEDHHGYG PYGVTSSLEE
301: MSSWLAPMST TPGGPLAEIL RPSTNLAISG DIESYSLMET PTPSSSPSRV MKKMTSSVSD ESSQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)