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AT5G24640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW6TeggNOG:ENOG411057SEMBL:AB010068EMBL:AY128306
EMBL:BT001164EMBL:CP002688EnsemblPlants:AT5G24640EnsemblPlants:AT5G24640.1
entrez:832535GeneID:832535Gramene:AT5G24640.1hmmpanther:PTHR34278
HOGENOM:HOG000090351KEGG:ath:AT5G24640OMA:CSEDHDEPhylomeDB:Q9FLU0
Proteomes:UP000006548RefSeq:NP_197852.1STRING:3702.AT5G24640.1TAIR:AT5G24640
UniGene:At.30948UniProt:Q9FLU0
Coordinates (TAIR10) chr5:+:8436404..8436760
Molecular Weight (calculated) 13392.70 Da
IEP (calculated) 9.66
GRAVY (calculated) -1.08
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSEGRHQGV VRTGMIHPRG FNPRHTNRLD SPPVFGDFTK MQPKTTNHSN IIGESERSKY SNCHVSPAIK SGHKSKGRRK LQPTSWWSED KLDRLIGSDS
101: SSAKDILDML CSEDHDEY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)