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AT5G23480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SWIB/MDM2 domain;Plus-3;GYF
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 628 Blast hits to 541 proteins in 110 species: Archae - 0; Bacteria - 43; Metazoa - 166; Fungi - 57; Plants - 154; Viruses - 1; Other Eukaryotes - 207 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41106A8eggNOG:KOG1862eggNOG:KOG1946EMBL:CP002688
EnsemblPlants:AT5G23480EnsemblPlants:AT5G23480.1entrez:832414Gene3D:1.10.245.10
Gene3D:3.30.1490.40GeneID:832414GO:GO:0003677Gramene:AT5G23480.1
hmmpanther:PTHR14445hmmpanther:PTHR14445:SF39InParanoid:F4KCX4InterPro:IPR003121
InterPro:IPR003169InterPro:IPR004343KEGG:ath:AT5G23480OMA:HYVENQE
PaxDb:F4KCX4Pfam:PF02201Pfam:PF02213Pfam:PF03126
Pfscan:PS50829Pfscan:PS51360PRIDE:F4KCX4PROSITE:PS50829
PROSITE:PS51360ProteinModelPortal:F4KCX4Proteomes:UP000006548RefSeq:NP_568434.4
SMART:SM00444SMART:SM00719SMR:F4KCX4STRING:3702.AT5G23480.1
SUPFAM:0053761SUPFAM:SSF159042SUPFAM:SSF47592SUPFAM:SSF55277
TAIR:AT5G23480UniGene:At.31007UniProt:F4KCX4
Coordinates (TAIR10) chr5:+:7916314..7919155
Molecular Weight (calculated) 65165.90 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.83
Length 570 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDNEKVKG SSKKRLRKPK SLEFVGWGSR NLIEFLESLG RDTTNKISEN DVTAIIMNYI REKSRETPLK SKKRRKTVAC DEKLRLLFGA GKINVIKVPD
101: LVEKHYVENQ EEDLFYDDLY ASEDDKQQRL SLSDKVAKQT KQVVSKPRGT FAAIVRDTVK LLYLRKSLVQ ELAKTPETFE SKVVRTFVRI KNPCQLVHVT
201: GVKEGDPIDG NLFQVTNYSY YLKDVTTSSL SDDDFSQEEC EELHQRINNG FAKRLTVVDM EEKARSLHED YLEKRELLQN PDEQKRLVDE VPEIVAEELE
301: PECEDDDDDR TIEDSLIVPN PEAHQSDKEQ RQRDLPVSSS VKKSQENSLL LKNPEEQLRL LCDVPDVVAE KLEPEFVDDD GKLVNDATVP NPEAFTEAHQ
401: SDEEIQPSDL PDSSIQKTLE DQPIWTASAG NKDLHEDVYE PPANGITLNT DSITEGEMNT KVSQHQSSTP VIDLSNKTQA HSNPIEIIEL SDDDDDDEKD
501: KNDQAYQSYD PKKVMWFYEY PKGKTHGPFS LTDLKTWSDE EYFVGVPDFK VWKTGESAVL LTKLLSQIKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)