AT3G08970.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 1.000 ASURE: endoplasmic reticulum What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
J domain protein localized in ER lumen. Can compensate for the growth defect in jem1 scj1 mutant yeast. Also shows similarity to HSP40 proteins and is induced by heat stress. At high temperatures, mutant alleles are not transmitted through the pollen due to defects in pollen tube growth. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ATERDJ3A; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Thioredoxin-like fold (InterPro:IPR012336), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G22360.1); Has 29746 Blast hits to 27935 proteins in 3434 species: Archae - 203; Bacteria - 10482; Metazoa - 6798; Fungi - 2759; Plants - 3202; Viruses - 20; Other Eukaryotes - 6282 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:2737589..2740265 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 62573.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 572 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVRTRLAISV VLVSTLLLLN VKAKSVDPYK VLGVSKDAKQ REIQKAFHKQ SLKYHPDKNK DKGAQEKFAE INNAYEILSD EEKRKNYDLY GDEKGQPGFD 101: SGFPGGNGGY SYSSSGGGFN FGGPGGWQNM GGGGGSKSFS FSFGGPSESS FGFGMDDIFS MFSGGSSKGK EQFGGFGSSS NAESKSKSST VAAIKTINSQ 201: VYKKDVVDQG MTWLLLSYLP SQRGSQYHES IIEEVAESLQ GALKVGRLNC ETESSLCKQL GIVPRRAPRM FVYSYTSSGK ATLAEYTEEL VAKKVKSFCQ 301: EHLPRFSKKI DLNTFDVSAV SSQKTPKVLL LSTKKDTPVI WRVLSGLYNG RFVFYNTEVH DTSDPKIQKL GVDKFPAIVG WLSNGEKQVL KTGITVKNLK 401: SAVQELGKLL EGLEKKNKKV SSKSQAGQAP NESSEKIPLL SRPNFDSICG ENTPVCIIGA FRSSNGKEKL QSIMSKVSQK SLSRRQASTT GSQDTVSYSL 501: LDATKQSAFL SSLDKSEFKT SSDKLLIAYK PRRGKFATFK GDMTIEEVEK FVAAVLNGDI QFTKTRQKPQ IK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)