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AT1G09080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23624714 (2013): endoplasmic reticulum
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Heat shock protein 70 (Hsp 70) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BIP3; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat, pollen tube growth; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1); Has 36561 Blast hits to 35981 proteins in 4871 species: Archae - 169; Bacteria - 17528; Metazoa - 4151; Fungi - 1824; Plants - 1283; Viruses - 337; Other Eukaryotes - 11269 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1557-MONOMERBioCyc:ARA:GQT-820-MONOMERBioGrid:22670eggNOG:COG0443
eggNOG:KOG0100EMBL:AC000106EMBL:AY156728EMBL:CP002684
EnsemblPlants:AT1G09080EnsemblPlants:AT1G09080.1entrez:837429Gene3D:1.20.1270.10
Gene3D:2.60.34.10GeneID:837429Genevisible:Q8H1B3GO:GO:0005524
GO:GO:0005788GO:GO:0006351GO:GO:0006355GO:GO:0009860
GO:GO:0016592hmmpanther:PTHR19375hmmpanther:PTHR19375:SF215HOGENOM:HOG000228135
InParanoid:Q8H1B3IntAct:Q8H1B3InterPro:IPR013126InterPro:IPR018181
InterPro:IPR029047InterPro:IPR029048iPTMnet:Q8H1B3KEGG:ath:AT1G09080
KO:K09490MINT:MINT-7712705ncoils:CoilOMA:RDIKFLP
PaxDb:Q8H1B3Pfam:PF00012Pfam:Q8H1B3PhylomeDB:Q8H1B3
PIR:H86222PRIDE:Q8H1B3PRINTS:PR00301PRO:PR:Q8H1B3
ProMEX:Q8H1B3PROSITE:PS00014PROSITE:PS00297PROSITE:PS00329
PROSITE:PS01036ProteinModelPortal:Q8H1B3Proteomes:UP000006548RefSeq:NP_001184944.1
RefSeq:NP_172382.4scanprosite:PS00297scanprosite:PS00329scanprosite:PS01036
SMR:Q8H1B3STRING:3702.AT1G09080.1SUPFAM:SSF100920SUPFAM:SSF100934
SUPFAM:SSF53067TAIR:AT1G09080tair10-symbols:BIP3TMHMM:TMhelix
UniGene:At.42242UniProt:Q8H1B3
Coordinates (TAIR10) chr1:-:2929268..2931804
Molecular Weight (calculated) 75153.70 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.44
Length 675 amino acids
Sequence (TAIR10)
(BLAST)
001: MIFIKENTAK MTRNKAIACL VFLTVLDFLM NIGAALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA
101: AKNQAAKNPE RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ
201: RQATKDAGAI AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK
301: DHKALGKLRR ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD
401: GKEPSKGTNP DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE
501: LGKFDLTGIL PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD
601: KEKLAKKISD EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)