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AT5G23000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb domain protein 37
Curator
Summary (TAIR10)
Putative homolog of the Blind gene in tomato. Together with RAX2 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB37, regulates axillary meristem formation. RAX1 is expressed in a small central domain within the boundary zone separating SAM and leaf primordia during early leaf primordium development and is currently the earliest spatial marker for future axillary meristems. Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 37 (MYB37); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT2G36890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB026660EMBL:AF062879
EMBL:AJ131517EMBL:AJ486900EMBL:AJ486901EMBL:AJ486902
EMBL:AJ486903EMBL:AJ486904EMBL:AJ486905EMBL:AJ486906
EMBL:AJ486907EMBL:AJ486908EMBL:AJ486909EMBL:AJ486910
EMBL:AJ486911EMBL:AJ486912EMBL:AJ486913EMBL:AJ486914
EMBL:AJ486915EMBL:AJ486916EMBL:AJ486917EMBL:AJ486918
EMBL:AJ486919EMBL:AJ486920EMBL:AJ486921EMBL:AJ486922
EMBL:AJ486923EMBL:AJ486924EMBL:AJ486925EMBL:AJ486926
EMBL:AJ486927EMBL:AJ486928EMBL:AJ486929EMBL:AJ486930
EMBL:AJ486931EMBL:AJ486932EMBL:AJ486933EMBL:AJ486934
EMBL:AJ486935EMBL:AJ486936EMBL:AK175507EMBL:AY519628
EMBL:CP002688EMBL:DQ446976EMBL:EF598612EMBL:EF598613
EMBL:EF598614EMBL:EF598615EMBL:EF598616EMBL:EF598617
EMBL:EF598618EMBL:EF598619EMBL:EF598620EMBL:EF598621
EMBL:EF598622EMBL:EF598623EMBL:EF598624EMBL:EF598625
EMBL:EF598626EMBL:EF598627EMBL:EF598628EMBL:EF598629
EMBL:EF598630EMBL:EF598631EMBL:EF598632EMBL:EF598633
EMBL:EF598634EMBL:EF598635EnsemblPlants:AT5G23000EnsemblPlants:AT5G23000.1
entrez:832364Gene3D:1.10.10.60GeneID:832364Genevisible:Q9FG68
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0007275Gramene:AT5G23000.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF654
InParanoid:Q9FG68InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
iPTMnet:Q9FG68KEGG:ath:AT5G23000KO:K09422OMA:KQMISGT
PaxDb:Q9FG68Pfam:PF00249Pfam:Q9FG68Pfscan:PS51294
PhylomeDB:Q9FG68PIR:T51651PRO:PR:Q9FG68PROSITE:PS51294
ProteinModelPortal:Q9FG68Proteomes:UP000006548RefSeq:NP_197691.1SMART:SM00717
SMR:Q9FG68STRING:3702.AT5G23000.1SUPFAM:SSF46689TAIR:AT5G23000
tair10-symbols:ATMYB37tair10-symbols:MYB37tair10-symbols:RAX1UniGene:At.7566
UniProt:Q9FG68
Coordinates (TAIR10) chr5:+:7696234..7697712
Molecular Weight (calculated) 37047.40 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.73
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)