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AT5G19700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.838
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AF296838EMBL:CP002688
EMBL:DQ056682EnsemblPlants:AT5G19700EnsemblPlants:AT5G19700.1entrez:832090
GeneID:832090Genevisible:Q4PSF4GO:GO:0005770GO:GO:0010015
GO:GO:0015238GO:GO:0015297GO:GO:0016021GO:GO:0031902
Gramene:AT5G19700.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF76HOGENOM:HOG000177026
InterPro:IPR002528KEGG:ath:AT5G19700KO:K03327OMA:TIFHIPM
PaxDb:Q4PSF4Pfam:PF01554PhylomeDB:Q4PSF4ProteinModelPortal:Q4PSF4
Proteomes:UP000006548Reactome:R-ATH-425366RefSeq:NP_197471.1SMR:Q4PSF4
STRING:3702.AT5G19700.1TAIR:AT5G19700TIGRfam:TIGR00797TIGRFAMs:TIGR00797
TMHMM:TMhelixUniGene:At.62431UniProt:Q4PSF4
Coordinates (TAIR10) chr5:-:6660821..6662347
Molecular Weight (calculated) 54330.20 Da
IEP (calculated) 6.60
GRAVY (calculated) 0.75
Length 508 amino acids
Sequence (TAIR10)
(BLAST)
001: METPNIISHT NLLSKIDLEK QNPAPIFPTI TELKSEARSL FSLAFPTILA ALILYARSAI SMLFLGHIGE LELAGGSLAI AFANITGYSV LAGLALGMDP
101: LCSQAFGAGR PKLLSLTLQR TVLFLLTSSV VIVALWLNLG KIMIYLHQDP SISSLAQTYI LCSIPDLLTN SFLHPLRIYL RAQGITSPLT LATLAGTIFH
201: IPMNFFLVSY LGWGFMGVSM AAAASNLLVV IFLVAHVWIA GLHQPTWTRP SSECFKDWGP VVTLAIPSCI GVCLEWWWYE IMTVLCGLLI DPSTPVASMG
301: ILIQTTSLLY IFPSSLGLAV STRVGNELGS NRPNKARLSA IVAVSFAGVM GLTASAFAWG VSDVWGWIFT NDVAIIKLTA AALPILGLCE LGNCPQTVGC
401: GVVRGTARPS MAANINLGAF YLVGTPVAVG LTFWAAYGFC GLWVGLLAAQ ICCAAMMLYV VATTDWEKEA IRARKLTCTE GVDVVITTTQ TNGDLSEPLI
501: YVVTVATD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)