AT5G19485.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.880 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transferases;nucleotidyltransferases | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transferases;nucleotidyltransferases; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT2G34970.1); Has 6119 Blast hits to 5902 proteins in 1501 species: Archae - 491; Bacteria - 3115; Metazoa - 435; Fungi - 482; Plants - 325; Viruses - 0; Other Eukaryotes - 1271 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6573907..6576352 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49038.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||
| Length | 456 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFQVVILAG GFSSYLVPLV AKEVPKALLP VANRPVLSYV LDLLESSNLK DLIVVVEGED AALKVGGWIS SACVDRLHVE VAAVAENVGT AGALRAIAHH 101: LTAKDILIVS GDIVSDIPPG AVAATHRRHD AAVTVMLCAQ PVSGPSESGG SGGKDKTKKP ACDDIIGLDS LKQFLLYIAK GTEIKKDTRV KKSILCAAGK 201: MEIRSDLMDS HIYAFKRAVL QEVLDQKPAF RSLKQDVLPY LVRTQLRSDV FSDQSNVEEN GNGNGKNNMQ NNEVVLSQIL SNASMPSFHQ VYESGLGTRK 301: THKCCVYIAD ESKYFVRLNS IQAFMDVNRD VIGESNHLSG YSFSAHHNIV HPSAELGSKT TVGPHCMLGE GSQVGDKCSV KRSVIGRHCR IGSNVKIVNS 401: VVMDHATIGD GCSIQGSVIC SNAQLQERVT LRDCQVEAGY VVCAGSEHKG ETFARK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)