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AT5G14570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.500
vacuole 0.500
ASURE: plasma membrane,vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17540716 (2007): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : high affinity nitrate transporter 2.7
Curator
Summary (TAIR10)
Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.
Computational
Description (TAIR10)
high affinity nitrate transporter 2.7 (NRT2.7); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter2.5 (TAIR:AT1G12940.1); Has 7777 Blast hits to 7739 proteins in 1625 species: Archae - 132; Bacteria - 6743; Metazoa - 43; Fungi - 326; Plants - 261; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).
Protein Annotations
BioGrid:16585eggNOG:COG2223eggNOG:ENOG410IE1FEMBL:AL163792
EMBL:AY035065EMBL:AY056363EMBL:CP002688EnsemblPlants:AT5G14570
EnsemblPlants:AT5G14570.1entrez:831308GeneID:831308Genevisible:Q9LYK2
GO:GO:0009705GO:GO:0015112GO:GO:0015706GO:GO:0016021
GO:GO:0042128Gramene:AT5G14570.1hmmpanther:PTHR23515hmmpanther:PTHR23515:SF5
HOGENOM:HOG000196276InParanoid:Q9LYK2IntAct:Q9LYK2InterPro:IPR011701
InterPro:IPR020846KEGG:ath:AT5G14570KO:K02575OMA:WLSLFSC
PaxDb:Q9LYK2Pfam:PF07690Pfam:Q9LYK2Pfscan:PS50850
PhylomeDB:Q9LYK2PIR:T48630PRIDE:Q9LYK2PRO:PR:Q9LYK2
PROSITE:PS50850ProteinModelPortal:Q9LYK2Proteomes:UP000006548RefSeq:NP_196961.1
STRING:3702.AT5G14570.1SUPFAM:SSF103473TAIR:AT5G14570tair10-symbols:ATNRT2.7
tair10-symbols:NRT2.7TMHMM:TMhelixUniGene:At.5082UniGene:At.70155
UniProt:Q9LYK2
Coordinates (TAIR10) chr5:-:4695331..4696890
Molecular Weight (calculated) 52680.60 Da
IEP (calculated) 5.20
GRAVY (calculated) 0.50
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPSQRNTKP PSFSDSTIPV DSDGRATVFR PFSLSSPHSR AFHLAWLSLF SCFFSTFSIP PLVPVISSDL NLSASTVSAA GIASFAGSIF SRLAMGPLCD
101: LIGPRTSSAI LSFLTAPVIL SASLVSSPTS FILVRFFVGF SLANFVANQY WMSSMFSGNV IGLANGVSAG WANVGAGISQ LLMPLIYSTI AEFLPRAVAW
201: RVSFVFPAIF QVTTAVLVLL YGQDTPHGNR KNSNQNKLTI PEEEEVLVVE EDERSSFVEI LIGGLGNYRA WILALLYGYS YGVELTTDNV IAGYFYERFG
301: VNLEAAGTIA ASFGISNIAS RPAGGMISDA LGKRFGMRGR LWGLWIVQSV AGLLCVLLGR VNSLWGSILV MWVFSVFVQA ASGLVFGVVP FVSTRSLGVV
401: AGITGSGGTV GAVVTQFLLF SGDDVRKQRS ISLMGLMTFV FALSVTSIYF PQWGGMCCGP SSSSEEEDIS RGLLVEDEDE EGKVVSGSLR PVC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)