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AT5G14280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-binding storekeeper protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G27270.1); Has 335 Blast hits to 330 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 315; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFPKeggNOG:ENOG4111S22EMBL:AL163817EMBL:CP002688
EnsemblPlants:AT5G14280EnsemblPlants:AT5G14280.1entrez:831278GeneID:831278
GO:GO:0003677GO:GO:0006355GO:GO:0016021Gramene:AT5G14280.1
hmmpanther:PTHR31766hmmpanther:PTHR31766:SF2HOGENOM:HOG000153170InterPro:IPR006634
InterPro:IPR007592KEGG:ath:AT5G14280ncoils:CoilOMA:MSINIGE
Pfam:PF03798Pfam:PF04504Pfscan:PS50922PIR:T48601
PROSITE:PS50922Proteomes:UP000006548RefSeq:NP_196932.1SMART:SM00724
STRING:3702.AT5G14280.1SwissPalm:Q9LYA1TAIR:AT5G14280TMHMM:TMhelix
UniGene:At.43713UniProt:Q9LYA1
Coordinates (TAIR10) chr5:+:4609123..4611444
Molecular Weight (calculated) 64132.80 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.17
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MATPTELGFS SPGGGGDDSD DNPPQKRTSK RTASETATEE ETKKKKKKKT KHNTKMASPP SNRIWNEEDE LSILKGLVDF RAKTGLESKI DWDAFYCYVK
101: GSIHVKVSKC QLMSKTRKLK KKFLDQMEKI DQGNDPHFTR SSETEAFGYS MMIWRKIDAE YTNGVMDKAH QSESGEEVFE EDEEVALIDK GAAKSGKSPH
201: EAVVVVDKIT TKKNGTAGKE SDDDDDDVLC AVRDAFETTM MSQGLSDYQK KLQLEKLMNL GTGKRRELSN EWKALCVEEL KLNINKLRFS AKLAEAANDD
301: YSSSSSSSIV SWVEIPISMS INIGEISIPD LPIFFSMFLT IYLIAYFIVF RNWKPQIRPE ASSCLISIFH GSPAVFLATR AVFSSSERSF ASANTAAQNT
401: VLDFSVAYFL TDLFHYIVFN PNDVLFIGHH VATLFVFLTC RFLVFHGACA ILGLLILAEV TSACQNAWTL AGARKNDPES RLAVKVYDLL SPPFYAFYSI
501: VRGVLGPLFF GKMVAFYARG GAHGVIPNWL WISWAIVVGI AITVSILWIW NLWIELFSER KANKIRVDKK IR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)