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AT2G24440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : selenium binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
selenium binding; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: selenium binding (TAIR:AT4G31360.1); Has 1421 Blast hits to 981 proteins in 155 species: Archae - 2; Bacteria - 33; Metazoa - 566; Fungi - 103; Plants - 97; Viruses - 1; Other Eukaryotes - 619 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5E8eggNOG:ENOG4112AU7EMBL:AC006403EMBL:AY085501
EMBL:AY102544EMBL:AY649257EMBL:CP002685EnsemblPlants:AT2G24440
EnsemblPlants:AT2G24440.1entrez:816980Gene3D:3.40.30.10GeneID:816980
Gramene:AT2G24440.1hmmpanther:PTHR33638hmmpanther:PTHR33638:SF1HOGENOM:HOG000241306
InterPro:IPR011893InterPro:IPR012336KEGG:ath:AT2G24440ncoils:Coil
OMA:HCKQCKSPhylomeDB:Q9ZQ24PIR:F84636Proteomes:UP000006548
RefSeq:NP_565570.1SMR:Q9ZQ24STRING:3702.AT2G24440.1SUPFAM:SSF52833
TAIR:AT2G24440TIGRfam:TIGR02174TIGRFAMs:TIGR02174UniGene:At.39158
UniProt:Q9ZQ24
Coordinates (TAIR10) chr2:+:10391124..10392492
Molecular Weight (calculated) 20713.00 Da
IEP (calculated) 9.44
GRAVY (calculated) -1.04
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKKVDGEG KGKAIANTRM LRSMDRKTRS DTKRDGSSSK LMKIESPEKK KRKTTKAKNV GAAKKKVKKE EVAVKIEKEE EEDDDAAEKE EDDDSDKKKI
101: VIEHCKQCKS FKERANEVKE GLEEAVPGII VTVNPDKPRR GCFEIREEGG ETFISLLAMK RPFTPMKELN MEEVIADIVE KIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)