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AT5G10625.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.845
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1ZQeggNOG:ENOG4112CDXEMBL:AL353995EMBL:AY065245
EMBL:BT014861EMBL:CP002688EnsemblPlants:AT5G10625EnsemblPlants:AT5G10625.1
entrez:2745983GeneID:2745983Gramene:AT5G10625.1hmmpanther:PTHR33433
hmmpanther:PTHR33433:SF3HOGENOM:HOG000237732InParanoid:Q9LXB5iPTMnet:Q9LXB5
KEGG:ath:AT5G10625OMA:WERYYEGPaxDb:Q9LXB5Pfam:Q9LXB5
PhylomeDB:Q9LXB5PIR:T49976PRIDE:Q9LXB5PRO:PR:Q9LXB5
Proteomes:UP000006548RefSeq:NP_974763.1STRING:3702.AT5G10625.1TAIR:AT5G10625
UniGene:At.28549UniProt:Q9LXB5
Coordinates (TAIR10) chr5:+:3358934..3359272
Molecular Weight (calculated) 12793.00 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.34
Length 112 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGVWVFNNG VIRLVENPNQ SGGVSTQSHG RRNVLVYLPT GEAVSSYSSL EQILRSLGWE RYFSGDSDLI QYHKRSSIDL ISLPRDFSKF NSVYMYDIVV
101: KNPNSFHVRD FN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)