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AT5G08565.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription initiation Spt4-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5204eggNOG:KOG3490EMBL:AB006697EMBL:AK228575
EMBL:AY086462EMBL:BT024785EMBL:CP002688EnsemblPlants:AT5G08565
EnsemblPlants:AT5G08565.1entrez:830757ExpressionAtlas:Q8LCQ3GeneID:830757
Genevisible:Q8LCQ3GO:GO:0005634GO:GO:0006351GO:GO:0008270
GO:GO:0032786hmmpanther:PTHR12882hmmpanther:PTHR12882:SF1HOGENOM:HOG000172685
InParanoid:Q8LCQ3InterPro:IPR009287InterPro:IPR016046InterPro:IPR022800
InterPro:IPR029040OMA:CTHLAMEPANTHER:PTHR12882PaxDb:Q8LCQ3
Pfam:PF06093Pfam:Q8LCQ3PhylomeDB:Q8LCQ3PIRSF:PIRSF025023
PRIDE:Q8LCQ3PRO:PR:Q8LCQ3ProteinModelPortal:Q8LCQ3Proteomes:UP000006548
Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-674695RefSeq:NP_568201.1
SMART:SM01389SMR:Q8LCQ3STRING:3702.AT5G08565.1SUPFAM:SSF63393
TAIR:AT5G08565UniGene:At.32557UniProt:Q8LCQ3
Coordinates (TAIR10) chr5:+:2775964..2777154
Molecular Weight (calculated) 13370.10 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.34
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEAPAQIPT SFGHELRACL RCRLVKTYDQ FRDSGCENCP FFKIEDDHER IVDVTTPNFN GIISMMDPRR SWAARWLRIG KFAPGCYTLA VSEALPEEMQ
101: FICQQARVQY VPPKRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)