AT5G08565.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Transcription initiation Spt4-like protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:2775964..2777154 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 13370.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.78 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 116 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGEAPAQIPT SFGHELRACL RCRLVKTYDQ FRDSGCENCP FFKIEDDHER IVDVTTPNFN GIISMMDPRR SWAARWLRIG KFAPGCYTLA VSEALPEEMQ 101: FICQQARVQY VPPKRI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)