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AT5G07710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G61390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:3.1.11.-eggNOG:ENOG410IGQ7eggNOG:ENOG4111I48EMBL:AB010070
EMBL:CP002688EnsemblPlants:AT5G07710EnsemblPlants:AT5G07710.1entrez:830664
Gene3D:3.30.420.10GeneID:830664Genevisible:Q9FLR0GO:GO:0003676
GO:GO:0004527GO:GO:0005634GO:GO:0005737GO:GO:0046872
Gramene:AT5G07710.1hmmpanther:PTHR30231hmmpanther:PTHR30231:SF6HOGENOM:HOG000243435
InParanoid:Q9FLR0InterPro:IPR012337InterPro:IPR013520KEGG:ath:AT5G07710
OMA:YATEIHQPaxDb:Q9FLR0Pfam:PF00929Pfam:Q9FLR0
PhylomeDB:Q9FLR0PRIDE:Q9FLR0PRO:PR:Q9FLR0ProteinModelPortal:Q9FLR0
Proteomes:UP000006548RefSeq:NP_196388.1SMART:SM00479SUPFAM:SSF53098
TAIR:AT5G07710UniGene:At.32685UniProt:Q9FLR0
Coordinates (TAIR10) chr5:+:2453310..2455357
Molecular Weight (calculated) 52170.10 Da
IEP (calculated) 5.36
GRAVY (calculated) -0.26
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPEDRSEIA FFDVETTVPK RGQRFAILEF GSILVCPKKL TELRSYTTLV QPADLSLISS LSVRCNGIKR DDVVLAPLFA DIADTVYDIL HGRIWAGHNI
101: LRFDCARIRE AFAEIGRQPP EPKGAIDSLG LLTQKFGRRA GDMKMATLAR YFGLGNQTHR SLDDVRMNLE VLKYCATVLF LESSLPYAHV DNSVSPETIS
201: SRRRIDASRE GNTVTTSVRL PSISENSAAQ PDPFNMSVLR NEMASDNHIQ SDILMEEEQI EPSDVVASEN TSDHEGFLTP DAMSLSNIKA MLFPFYPGSQ
301: MMKLKLLHGD SPLQLYCSYL KIRFGVNGKF LDNTGRRRLN FVVDLNPSLY SILEACDSNA QKLSVDSGST SEWNPVVNPM KGFVNYPNAR IHIATEINGD
401: EARYATEIHQ RESSGATQKL IFSNPNNEEL ESLLTTGSVV DAFLSLEPYD YQQKAGIRLV AKKLVIQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)