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AT5G07590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 672 Blast hits to 646 proteins in 166 species: Archae - 0; Bacteria - 97; Metazoa - 271; Fungi - 156; Plants - 85; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y2P7eggNOG:KOG4497EMBL:BT020258EMBL:BT026140
EMBL:CP002688EnsemblPlants:AT5G07590EnsemblPlants:AT5G07590.1entrez:830652
Gene3D:2.120.10.30GeneID:830652Gramene:AT5G07590.1hmmpanther:PTHR16220
hmmpanther:PTHR16220:SF0InterPro:IPR001680InterPro:IPR011042InterPro:IPR017986
KEGG:ath:AT5G07590OMA:ATKNDNMPhylomeDB:Q5PP39Proteomes:UP000006548
RefSeq:NP_196376.2SMART:SM00320SMR:Q5PP39STRING:3702.AT5G07590.1
SUPFAM:SSF50978TAIR:AT5G07590UniGene:At.32703UniProt:Q5PP39
Coordinates (TAIR10) chr5:-:2401712..2403731
Molecular Weight (calculated) 51855.80 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.09
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFTEAYKQT GPCCFSPNSR YVAVANDYRL VIRDTFSFQV VQLFSCLDKI SYIEWALDSE YILCGLYKKP MIQAWSLTQP EWTCKIDEGP AGISYARWSP
101: DSRHILTTSE FQLRLTVWSL LNTACVHVQW PKHGSKGVSF NQDGKFAAIC TRRDCKDYVN LLSCQSWEIM GSFAVDTLDL ADLEWSPDDS SIVVWDSPLE
201: YKVLIYSPDG RCLFKYQAYE CGLGVKTVSW SPCGQFLAIG SYDQMLRVLN HLTWKTFAEF LHLSTVRAPC SAAIFKEIDE PLQLDMSELS LDENFMPSNY
301: DASEGYISVR YEVMELPVAF PFQKPPADKP NPKQGVGLLA WSKDSQYICT RNDSMPTALW IWDMRLLEVA AILVQKEPIR AAVWDPTCTR LLLCTGSSHL
401: YMWTPSGAFC VCNPLPGFSI SDLKWNIDGS CLLLKDKDAF CCATVPSLPE SSDYSSDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)