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AT4G16120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 9524266
AmiGO : golgi 16618929
SwissProt : plasma membrane 16381842
TAIR : golgi 16618929
TAIR : plasma membrane 12805588
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): endoplasmic reticulum
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:16618929 (2006): Golgi
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : COBRA-like protein-7 precursor
Curator
Summary (TAIR10)
putative membrane-anchored cell wall protein
Computational
Description (TAIR10)
COBRA-like protein-7 precursor (COBL7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, Golgi apparatus, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like protein 8 precursor (TAIR:AT3G16860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGX1eggNOG:ENOG410ZHV6EMBL:AK117261EMBL:AL161543
EMBL:BT005903EMBL:CP002687EMBL:Y14423EMBL:Z97340
EnsemblPlants:AT4G16120EnsemblPlants:AT4G16120.1entrez:827298GeneID:827298
Genevisible:Q8GZ17GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0009506GO:GO:0010215GO:GO:0016049GO:GO:0031225
GO:GO:0046658Gramene:AT4G16120.1hmmpanther:PTHR31052hmmpanther:PTHR31052:SF3
HOGENOM:HOG000217914InParanoid:Q8GZ17InterPro:IPR006918KEGG:ath:AT4G16120
OMA:SMKGAHPPaxDb:Q8GZ17Pfam:PF04833Pfam:Q8GZ17
PhylomeDB:Q8GZ17PIR:E71427PRIDE:Q8GZ17PRO:PR:Q8GZ17
ProDom:PD140986ProteinModelPortal:Q8GZ17Proteomes:UP000006548RefSeq:NP_567484.1
STRING:3702.AT4G16120.1TAIR:AT4G16120tair10-symbols:ATSEB1tair10-symbols:COBL7
tair10-symbols:SEB1UniGene:At.182UniProt:Q8GZ17
Coordinates (TAIR10) chr4:-:9116591..9119138
Molecular Weight (calculated) 72605.50 Da
IEP (calculated) 7.63
GRAVY (calculated) -0.22
Length 661 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSAPNFIPR LLLLSLLIVS IPLTSSQSDA NTTNPSPSPP SDSDLCNGVF VSYTHTKGSK IPPNDTANQP YRFESVITVL NHGRDELKSW RVFVKFAHRE
101: ILVSASNAVL SDGSSLPVSV ENGTVFAGYP SSDLKSAIQT AGDVTQMQAR VELVGTQFGV APPNVPLPKN ITLATDGWKC PKATQKGTNV LQVCCIPDPD
201: YDNREIIDNE FLPRKDGDLT IMYDVVRSYS SNYMAQVTME NHNPLGRLDN WKLSFDWMRD EFIYTMKGAY PSIVDSSDCV DGPQAKHYQD LDFSNVLSCA
301: RRPTVIDLPP TKYNDSTFGL IPFCCRNGTI LPRSMDPSKS SSVFQMQVYK MPPDLNISAL SPPQNWRING TLNPDYKCGP PVRVSPSQFV DPSGLPSNRT
401: AFASWQVVCN ITQPKDASPR CCVSFSAYFN DSIVPCKTCA CGCSSNKAAR ACSATAPSLL LPQQALLVPF ENRTELTVAW AYLKQRPVPN PMPCGDNCGV
501: SINWHLATDY RGGWTARVTV FNWGETDFVD WFTAVQMKNA APGFEKAYSF NASTIGINGK NNTIFMEGLP GLNYLVAERD GENPLKNPRI PGKQQSVMSF
601: TKKLTPGINV PGGDGFPSKV FFNGEECSLP TILPMRSSQH RKHISVFLLA LPVLALLILR A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)