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AT5G04250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.953
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G03330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNYWeggNOG:KOG2605EMBL:AK221616EMBL:AY086961
EMBL:BT024878EMBL:CP002688EMBL:JQ013455EnsemblPlants:AT5G04250
EnsemblPlants:AT5G04250.1EnsemblPlants:AT5G04250.2entrez:830304GeneID:830304
GO:GO:0008233Gramene:AT5G04250.1Gramene:AT5G04250.2hmmpanther:PTHR12419
hmmpanther:PTHR12419:SF19HOGENOM:HOG000264791InterPro:IPR003323KEGG:ath:AT5G04250
MEROPS:C85.A03OMA:TTPCTAFPfam:PF02338Pfscan:PS50802
PhylomeDB:Q8LBW2PROSITE:PS50802Proteomes:UP000006548RefSeq:NP_001119168.1
RefSeq:NP_568136.1SMR:Q8LBW2STRING:3702.AT5G04250.1SUPFAM:SSF54001
TAIR:AT5G04250UniGene:At.33154UniGene:At.71244UniProt:Q8LBW2
Coordinates (TAIR10) chr5:+:1176397..1178492
Molecular Weight (calculated) 39233.50 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.65
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYEPDPDAL RWGLHDLEVC TLTNAGSCSS VTRYESGGGG TQGYVREGYN QPVTGYVDND AVIAQFYQDE LSRVARAEAS GINSLSPTSV VAQDWPHPHQ
101: GQENQGEAID ITQESDILHN HNGNMEDKNV ARIRFEGGQS SPSRDDDSVC SVEIEEESWS EVGKRLNQMI PIAHVPKING ELPSEDEQIS DHERLFQRLQ
201: LYGLVENKIE GDGNCQFRSL SDQLYRSPEH HNFVREQVVN QLAYNREIYE GYVPMAYNDY LKAMKRNGEW GDHVTLQAAA DLFGVRMFVI TSFKDTCYIE
301: ILPHFQKSNR LICLSFWAEV HYNSIYPEGE LPIPEGKKKK KYWVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)