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AT5G03500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Mediator complex, subunit Med7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mediator complex, subunit Med7; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med7 (InterPro:IPR009244); BEST Arabidopsis thaliana protein match is: Mediator complex, subunit Med7 (TAIR:AT5G03220.1); Has 402 Blast hits to 400 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 158; Plants - 58; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
BioGrid:17098eggNOG:ENOG410ZFRUeggNOG:KOG0570EMBL:AK317313
EMBL:AL162751EMBL:AY075596EMBL:AY097400EMBL:CP002688
EnsemblPlants:AT5G03500EnsemblPlants:AT5G03500.1EnsemblPlants:AT5G03500.2EnsemblPlants:AT5G03500.3
entrez:831822GeneID:831822Genevisible:Q9LZD7GO:GO:0001104
GO:GO:0006351GO:GO:0016592Gramene:AT5G03500.1Gramene:AT5G03500.2
Gramene:AT5G03500.3hmmpanther:PTHR21428hmmpanther:PTHR21428:SF11HOGENOM:HOG000241102
InParanoid:Q9LZD7IntAct:Q9LZD7InterPro:IPR009244KEGG:ath:AT5G03500
KO:K15148ncoils:CoilOMA:LRVMMELPANTHER:PTHR21428
PaxDb:Q9LZD7Pfam:PF05983Pfam:Q9LZD7PhylomeDB:Q9LZD7
PIR:T48375PRIDE:Q9LZD7PRO:PR:Q9LZD7ProteinModelPortal:Q9LZD7
Proteomes:UP000006548RefSeq:NP_001078525.1RefSeq:NP_001190215.1RefSeq:NP_195970.2
SMR:Q9LZD7STRING:3702.AT5G03500.1SUPFAM:SSF140718TAIR:AT5G03500
UniGene:At.48976UniProt:Q9LZD7
Coordinates (TAIR10) chr5:-:876673..877660
Molecular Weight (calculated) 19300.00 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.66
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MATATYPPPP PYYRLYKDFS ENTDSAPEPP PPIEGTYVCF GGNYTTEDVL PSLEEQGVPQ LYPKDSNLDY KKELRSLNRE LQLHILELAD VLVDRPSQYA
101: KRIGEISSIF KNLHHLLNSL RPHQARATLI HIMELQIQQR KQAVEDIKRR REEAQGLLKD AFVTLDGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)