suba logo
AT5G02170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.852
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G02180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1303EMBL:AY102114EMBL:BT005813
EMBL:CP002688EnsemblPlants:AT5G02170EnsemblPlants:AT5G02170.1entrez:831896
ExpressionAtlas:Q8LPF4GeneID:831896GO:GO:0016021Gramene:AT5G02170.1
hmmpanther:PTHR22950hmmpanther:PTHR22950:SF313HOGENOM:HOG000238029InterPro:IPR013057
OMA:FLASHLQPfam:PF01490PhylomeDB:Q8LPF4Proteomes:UP000006548
Reactome:R-ATH-425393Reactome:R-ATH-888590RefSeq:NP_195837.2STRING:3702.AT5G02170.1
TAIR:AT5G02170TMHMM:TMhelixUniGene:At.33451UniProt:Q8LPF4
Coordinates (TAIR10) chr5:+:427859..430472
Molecular Weight (calculated) 57541.40 Da
IEP (calculated) 6.24
GRAVY (calculated) 0.51
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQNETFDQE REDLYHTFDE EDEESQTESS VPSTPLSRNR SEDVPVPWPR SYRQSMDLLT GVTPPTSTSF VSSFRQRRQS SVFGSFTSSP SKQQLLIDKD
101: EIQSSVVSSI KSFLASHLQL SVPGDLLTPQ ENRSCTFSQS VLNGINVLCG VALLTMPYAV KEGGWLGLFI LFSFGIITFY TGILLKRCLE NSPGIHTYPD
201: IGQAAFGTTG RILVSILLYV ELYASCVEYI IMMSDNLSRM FPNTSLYING FSLDSTQVFA ITTTLIVLPT VWLKDLSLLS YLSAGGVISS ILLALCLFWA
301: GSVDGVGFHI SGQALDITNI PVAIGIYGFG FGSHSVFPNI YSSMKEPSKF PTVLLISFAF CTLFYIAVAV CGFTMFGDAI QSQFTLNMPP HFTSSKIAVW
401: TAVVTPMTKY ALTITPVMLS LEELIPSSSR KMRSKGVSML FRTILVLSTL VVALTVPFFA TVAALIGSFI AMLIALIFPC LCYISIMKGR LTNFQIGICI
501: LIVIIGIVSG CCGTYSAIAR LIGEMT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)