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AT5G01900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 62
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group III
Computational
Description (TAIR10)
WRKY DNA-binding protein 62 (WRKY62); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 38 (TAIR:AT5G22570.1); Has 3146 Blast hits to 2717 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3132; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JGRCeggNOG:ENOG410YZZHEMBL:AF224700EMBL:AL162351
EMBL:CP002688EnsemblPlants:AT5G01900EnsemblPlants:AT5G01900.1entrez:831826
ExpressionAtlas:Q9LZV6Gene3D:2.20.25.80GeneID:831826GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009863GO:GO:0042742
GO:GO:0043565Gramene:AT5G01900.1hmmpanther:PTHR31221hmmpanther:PTHR31221:SF16
HOGENOM:HOG000097071InParanoid:Q9LZV6IntAct:Q9LZV6InterPro:IPR003657
KEGG:ath:AT5G01900OMA:PLYSTTYPaxDb:Q9LZV6Pfam:PF03106
Pfam:Q9LZV6Pfscan:PS50811PhylomeDB:Q9LZV6PIR:T48211
PRIDE:Q9LZV6PRO:PR:Q9LZV6PROSITE:PS50811ProteinModelPortal:Q9LZV6
Proteomes:UP000006548RefSeq:NP_195810.2SMART:SM00774SMR:Q9LZV6
STRING:3702.AT5G01900.1SUPFAM:0050605SUPFAM:SSF118290TAIR:AT5G01900
tair10-symbols:ATWRKY62tair10-symbols:WRKY62UniGene:At.4741UniProt:C0SVM7
UniProt:Q9LZV6
Coordinates (TAIR10) chr5:-:351136..352013
Molecular Weight (calculated) 30444.00 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.96
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSCQQKAME KLLHGHGCAN QLLIMDQTES DSSMEREDLA KSVLHCFSDA LSILIDTNDH QDDQSNNSSP QDSSPVLESS RKPLHKRGRK TSMAESSDYH
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)