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AT5G01720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.944
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27920.1); Has 15959 Blast hits to 6468 proteins in 357 species: Archae - 0; Bacteria - 920; Metazoa - 6194; Fungi - 1434; Plants - 4975; Viruses - 16; Other Eukaryotes - 2420 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AK229588EMBL:AL161946
EMBL:AY086589EMBL:AY091103EMBL:AY122938EMBL:CP002688
EnsemblPlants:AT5G01720EnsemblPlants:AT5G01720.1entrez:831688Gene3D:3.80.10.10
GeneID:831688Genevisible:Q8RWU5Gramene:AT5G01720.1hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF478HOGENOM:HOG000244114InParanoid:Q8RWU5InterPro:IPR001611
InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT5G01720KO:K10268
OMA:MIPLAHFPaxDb:Q8RWU5Pfam:PF13516Pfam:Q8RWU5
PhylomeDB:Q8RWU5PIR:T48193PRIDE:Q8RWU5PRO:PR:Q8RWU5
ProteinModelPortal:Q8RWU5Proteomes:UP000006548RefSeq:NP_568094.2SMART:SM00367
SMR:Q8RWU5STRING:3702.AT5G01720.1SUPFAM:SSF52047TAIR:AT5G01720
UniGene:At.24859UniProt:Q8RWU5
Coordinates (TAIR10) chr5:-:267118..270391
Molecular Weight (calculated) 72278.80 Da
IEP (calculated) 8.27
GRAVY (calculated) 0.15
Length 665 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKVKQIRVL KPFDLLSEEL VFIILDLISP NPSDLKSFSL TCKSFYQLES KHRGSLKPLR SDYLPRILTR YRNTTDLDLT FCPRVTDYAL SVVGCLSGPT
101: LRSLDLSRSG SFSAAGLLRL ALKCVNLVEI DLSNATEMRD ADAAVVAEAR SLERLKLGRC KMLTDMGIGC IAVGCKKLNT VSLKWCVGVG DLGVGLLAVK
201: CKDIRTLDLS YLPITGKCLH DILKLQHLEE LLLEGCFGVD DDSLKSLRHD CKSLKKLDAS SCQNLTHRGL TSLLSGAGYL QRLDLSHCSS VISLDFASSL
301: KKVSALQSIR LDGCSVTPDG LKAIGTLCNS LKEVSLSKCV SVTDEGLSSL VMKLKDLRKL DITCCRKLSR VSITQIANSC PLLVSLKMES CSLVSREAFW
401: LIGQKCRLLE ELDLTDNEID DEGLKSISSC LSLSSLKLGI CLNITDKGLS YIGMGCSNLR ELDLYRSVGI TDVGISTIAQ GCIHLETINI SYCQDITDKS
501: LVSLSKCSLL QTFESRGCPN ITSQGLAAIA VRCKRLAKVD LKKCPSINDA GLLALAHFSQ NLKQINVSDT AVTEVGLLSL ANIGCLQNIA VVNSSGLRPS
601: GVAAALLGCG GLRKAKLHAS LRSLLPLSLI HHLEARGCAF LWKDNTLQAE LDPKYWKQQL EEMAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)